Detailed information NTG0485663

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: IF690_RS25570
• Genome accession: NZ_CP061943
• Coordinates: 5771952..5773280 (+)
• Length: 442 a.a.
• NCBI ID: WP_202697943.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SK3(2021)
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5766952..5778280

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF690_RS25550 (IF690_25540)	pgeF	5768452..5769177 (-)	726	WP_202697937.1	peptidoglycan editing factor PgeF	-
IF690_RS25555 (IF690_25545)	rluD	5769174..5770136 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
IF690_RS25560 (IF690_25550)	-	5770288..5771310 (+)	1023	WP_202697939.1	outer membrane protein assembly factor BamD	-
IF690_RS25565 (IF690_25555)	-	5771445..5771678 (+)	234	WP_007924721.1	PP0621 family protein	-
IF690_RS25570 (IF690_25560)	pilR	5771952..5773280 (+)	1329	WP_202697943.1	sigma-54 dependent transcriptional regulator	Regulator
IF690_RS25575 (IF690_25565)	thiO	5773277..5774377 (-)	1101	WP_202697944.1	glycine oxidase ThiO	-
IF690_RS25580 (IF690_25570)	-	5774432..5774833 (-)	402	WP_202697945.1	type IV pilin protein	-
IF690_RS25585 (IF690_25575)	-	5774847..5777921 (-)	3075	WP_202697946.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48831.36 Da
• Isoelectric Point: 9.1680

>NTDB_id=485663 IF690_RS25570 WP_202697943.1 5771952..5773280(+) (pilR) [Pseudomonas sp. SK3(2021)]
MGPRQKVLIVDDDPGIREYLEISLGRMQRHTRSVRTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSTCARQETAVHALKAGAIDFLSKPVALARLRELLNGPLPKSIPPKPVTGPLLGNSTAMHKLRGQIHKLARSQASVYIS
GESGSGKELVARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLAQLQPGALLALQGYDFPGNVRELENLLERAHTLCENGQIEARDLQLTPNSAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=485663 IF690_RS25570 WP_202697943.1 5771952..5773280(+) (pilR) [Pseudomonas sp. SK3(2021)]
ATGGGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGTGTCCGCACCCTGGGCGAAGCCCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTGCTCGAGCATATCCAGCGCCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCACGCCCTGAAGGCTGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAGCTACTGAACGGCCCCCTGCCCAAATCGATACCACCGAAGCCTGTTACTGGCCCCTTGC
TGGGCAATTCGACCGCCATGCACAAACTGCGTGGACAGATCCACAAACTGGCCCGGAGTCAGGCCTCGGTCTATATCAGC
GGAGAATCCGGCAGCGGCAAGGAACTGGTCGCCCGCGCTATCCATGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGGGCCATTCCGCCGGAGCTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGTCAGGACCTCTACTACCGCC
TCAACGTGATCGAGCTGGCGGTGCCACCGCTAAGGGCGCGCAAGGCTGATATCGAGCCCTTGGCCACCGCCATCCTCGAG
CGCCTGGCACAGGGCAACGGCCAACAATTGGCGCAGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGATTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAGCGGGCGCACACCCTGTGCGAGAACGGGCAGATCGAAGCACGCGACC
TGCAACTGACGCCGAACAGCGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTACCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (133-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.222	100	0.674
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457