Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IF690_RS09665 Genome accession   NZ_CP061943
Coordinates   2123429..2124064 (+) Length   211 a.a.
NCBI ID   WP_023968416.1    Uniprot ID   -
Organism   Pseudomonas sp. SK3(2021)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2118429..2129064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF690_RS09645 (IF690_09645) - 2118675..2119607 (+) 933 WP_009047814.1 ABC transporter ATP-binding protein -
  IF690_RS09650 (IF690_09650) - 2119604..2120383 (+) 780 WP_007931651.1 ABC transporter permease -
  IF690_RS09655 (IF690_09655) - 2120432..2120947 (-) 516 WP_202699889.1 DUF2062 domain-containing protein -
  IF690_RS09660 (IF690_09660) comA 2121095..2123326 (+) 2232 WP_202699890.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF690_RS09665 (IF690_09665) exbB 2123429..2124064 (+) 636 WP_023968416.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IF690_RS09670 (IF690_09670) - 2124061..2124489 (+) 429 WP_023968417.1 biopolymer transporter ExbD -
  IF690_RS09675 (IF690_09675) lpxK 2124489..2125499 (+) 1011 WP_202699891.1 tetraacyldisaccharide 4'-kinase -
  IF690_RS09680 (IF690_09680) - 2125523..2125708 (+) 186 WP_007931663.1 Trm112 family protein -
  IF690_RS09685 (IF690_09685) kdsB 2125705..2126469 (+) 765 WP_202699892.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IF690_RS09690 (IF690_09690) - 2126469..2126933 (+) 465 WP_202699893.1 low molecular weight protein-tyrosine-phosphatase -
  IF690_RS09695 (IF690_09695) murB 2126930..2127949 (+) 1020 WP_202699894.1 UDP-N-acetylmuramate dehydrogenase -
  IF690_RS09700 (IF690_09700) - 2128197..2128667 (+) 471 WP_016702177.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22917.10 Da        Isoelectric Point: 8.1069

>NTDB_id=485654 IF690_RS09665 WP_023968416.1 2123429..2124064(+) (exbB) [Pseudomonas sp. SK3(2021)]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMASNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=485654 IF690_RS09665 WP_023968416.1 2123429..2124064(+) (exbB) [Pseudomonas sp. SK3(2021)]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCACATCTGCTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCTGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCATGAACTGGAGCGCTACCT
CAATGCCCTTGGCACCATCGCCGCGATGGCGCCGTTGCTGGGTTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCATTCATGGGCTCGGGCATGGCCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCATCGTTTCCTGCAACGCCGGGTCGATGAACTCGTCGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.204

100

0.872