Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IF690_RS09660 Genome accession   NZ_CP061943
Coordinates   2121095..2123326 (+) Length   743 a.a.
NCBI ID   WP_202699890.1    Uniprot ID   -
Organism   Pseudomonas sp. SK3(2021)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2116095..2128326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF690_RS09635 (IF690_09635) - 2117217..2117876 (+) 660 WP_202699887.1 transglutaminase family protein -
  IF690_RS09640 (IF690_09640) - 2117919..2118542 (+) 624 WP_202699888.1 glutathione S-transferase -
  IF690_RS09645 (IF690_09645) - 2118675..2119607 (+) 933 WP_009047814.1 ABC transporter ATP-binding protein -
  IF690_RS09650 (IF690_09650) - 2119604..2120383 (+) 780 WP_007931651.1 ABC transporter permease -
  IF690_RS09655 (IF690_09655) - 2120432..2120947 (-) 516 WP_202699889.1 DUF2062 domain-containing protein -
  IF690_RS09660 (IF690_09660) comA 2121095..2123326 (+) 2232 WP_202699890.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF690_RS09665 (IF690_09665) exbB 2123429..2124064 (+) 636 WP_023968416.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IF690_RS09670 (IF690_09670) - 2124061..2124489 (+) 429 WP_023968417.1 biopolymer transporter ExbD -
  IF690_RS09675 (IF690_09675) lpxK 2124489..2125499 (+) 1011 WP_202699891.1 tetraacyldisaccharide 4'-kinase -
  IF690_RS09680 (IF690_09680) - 2125523..2125708 (+) 186 WP_007931663.1 Trm112 family protein -
  IF690_RS09685 (IF690_09685) kdsB 2125705..2126469 (+) 765 WP_202699892.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IF690_RS09690 (IF690_09690) - 2126469..2126933 (+) 465 WP_202699893.1 low molecular weight protein-tyrosine-phosphatase -
  IF690_RS09695 (IF690_09695) murB 2126930..2127949 (+) 1020 WP_202699894.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81230.41 Da        Isoelectric Point: 10.2133

>NTDB_id=485653 IF690_RS09660 WP_202699890.1 2121095..2123326(+) (comA) [Pseudomonas sp. SK3(2021)]
MRTGMLALAAGLLSLRFLPALPAIGWLVVLPAVALMLLPFRTYPLAFFLLGLAWACVSAQWALDDRLAEPLDGQTRWLEG
QVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATPESWRARIRQRLLQVDAHGRAGGLVALVLGDGSGLSRDDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLLEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWVAPAIPFWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCVSGEQWQWDGVRFSLWQWADAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLNTSLAVKTHWLQAPHHGSRSSSSPVLLKALAPSAVLISRGHGNGFGHPHSQVVERYRQQGTVIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=485653 IF690_RS09660 WP_202699890.1 2121095..2123326(+) (comA) [Pseudomonas sp. SK3(2021)]
ATGCGCACAGGGATGCTAGCGTTGGCGGCGGGGCTTTTAAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGTAGTGCTGCCGGCAGTGGCCTTGATGCTGCTGCCGTTTCGTACCTATCCATTGGCTTTTTTCCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGCGCGCAATGGGCGCTGGACGATCGTTTGGCGGAACCGCTCGATGGGCAGACCCGCTGGCTCGAGGGC
CAGGTGGTGGGACTGCCGCAGCAGGCCGAGGGGGTGTTGCGTTTCGAGCTGGAAGGAGGACGGGCGCGGCGCGGACGGAT
TCCCCAGCGTCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGCCCCGCCGGGCTGGTCAACCTGCAGGCTTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGACAACTGCTGGCTGCTACACCGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
CGCCCATGGGCGCGCTGGTGGCCTGGTGGCCCTGGTACTGGGCGACGGCTCGGGGTTGAGCCGGGACGACTGGCGTGTCC
TGCAGGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCGGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTATGGCCTGTGGCCCGGTCGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGATGTACCGGTTCGGCGTGCCTGCGTAATGGTCGCCCTGGTGCTGATCT
GGCGCCTGCGTTTTCGTCACCTGGGGGCTTGGTGGCCGTTCCTGCTGGCTCTGAATGCGGTGCTGTTGTTAGAGCCGCTG
GCCAGTCTGCAGCCAGGATTCTGGCTGTCCTTTACTGCGGTGGCGGTGCTGATCCTGATCTTTGGCGGGCGTCTGGGGGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAGTGGCTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGGACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTCGCCGGTGGTTTGCTGGATGTGCTGTT
TCGCGGTCTGGCGCTGCTGGCCGCACAATGGCCGGCATGGGTAGCTCCGGCCATACCGTTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGCTGTTGCTGCCCGCGGGGGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGCTGCCATACGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAAGGCTTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTACGACGCCGGCCCGCGTTTTGGCGACTCCGACCTGGGTGCCCGGGTGGTACTGC
CATCGTTGCGCAAGCTGGGCGTCGCGCGCCTCGACCTGATGTTGCTCAGCCATGCCGATGCCGACCATGCCGGTGGCGCC
GATGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGATTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGTCAGCGGCGAGCAATGGCAATGGGACGGGGTACGTTTTTCCCTGTGGCAATGGGCGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCGGAG
CGCGCGCTGTTAAACACCTCGCTGGCCGTCAAGACCCATTGGTTGCAGGCGCCGCATCACGGCAGTCGCAGCTCGTCGTC
CCCTGTCTTGCTCAAGGCTCTTGCGCCTTCGGCGGTGCTGATTTCCCGGGGGCACGGCAATGGCTTCGGGCATCCACACT
CGCAAGTCGTCGAACGTTATCGCCAGCAAGGGACCGTCATTTACGACAGCGCGGAGCAAGGAGCGCTGCGGCTGATGCTG
GGTACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.534

96.77

0.624