Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IEN91_RS17820 Genome accession   NZ_CP061938
Coordinates   3589210..3589899 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain FIO1408     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3584210..3594899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEN91_RS17785 (IEN91_17785) - 3584408..3584890 (-) 483 WP_003151394.1 flagellar protein FlgN -
  IEN91_RS17790 (IEN91_17790) flgM 3584905..3585171 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  IEN91_RS17795 (IEN91_17795) - 3585241..3585660 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  IEN91_RS17800 (IEN91_17800) comFC 3585734..3586423 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  IEN91_RS17805 (IEN91_17805) - 3586429..3586713 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  IEN91_RS17810 (IEN91_17810) comFA 3586771..3588156 (-) 1386 WP_063174504.1 DEAD/DEAH box helicase Machinery gene
  IEN91_RS17815 (IEN91_17815) - 3588264..3589112 (-) 849 WP_014305929.1 DegV family protein -
  IEN91_RS17820 (IEN91_17820) degU 3589210..3589899 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IEN91_RS17825 (IEN91_17825) degS 3589976..3591139 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  IEN91_RS17830 (IEN91_17830) - 3591362..3592009 (+) 648 WP_060657503.1 YigZ family protein -
  IEN91_RS17835 (IEN91_17835) - 3592014..3593228 (+) 1215 WP_057080262.1 LCP family protein -
  IEN91_RS17840 (IEN91_17840) - 3593318..3594394 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=485620 IEN91_RS17820 WP_003219701.1 3589210..3589899(-) (degU) [Bacillus velezensis strain FIO1408]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=485620 IEN91_RS17820 WP_003219701.1 3589210..3589899(-) (degU) [Bacillus velezensis strain FIO1408]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1