Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   IEN91_RS17810 Genome accession   NZ_CP061938
Coordinates   3586771..3588156 (-) Length   461 a.a.
NCBI ID   WP_063174504.1    Uniprot ID   -
Organism   Bacillus velezensis strain FIO1408     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3581771..3593156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEN91_RS17775 (IEN91_17775) flgL 3581946..3582863 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  IEN91_RS17780 (IEN91_17780) flgK 3582875..3584392 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  IEN91_RS17785 (IEN91_17785) - 3584408..3584890 (-) 483 WP_003151394.1 flagellar protein FlgN -
  IEN91_RS17790 (IEN91_17790) flgM 3584905..3585171 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  IEN91_RS17795 (IEN91_17795) - 3585241..3585660 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  IEN91_RS17800 (IEN91_17800) comFC 3585734..3586423 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  IEN91_RS17805 (IEN91_17805) - 3586429..3586713 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  IEN91_RS17810 (IEN91_17810) comFA 3586771..3588156 (-) 1386 WP_063174504.1 DEAD/DEAH box helicase Machinery gene
  IEN91_RS17815 (IEN91_17815) - 3588264..3589112 (-) 849 WP_014305929.1 DegV family protein -
  IEN91_RS17820 (IEN91_17820) degU 3589210..3589899 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IEN91_RS17825 (IEN91_17825) degS 3589976..3591139 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  IEN91_RS17830 (IEN91_17830) - 3591362..3592009 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52457.99 Da        Isoelectric Point: 10.2294

>NTDB_id=485619 IEN91_RS17810 WP_063174504.1 3586771..3588156(-) (comFA) [Bacillus velezensis strain FIO1408]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEHITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKGRQELLVWAVCGSGKTEMLFPGIEY
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=485619 IEN91_RS17810 WP_063174504.1 3586771..3588156(-) (comFA) [Bacillus velezensis strain FIO1408]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAGCATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGGGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTAT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629