Detailed information NTG0485595

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: J9265_RS10325
• Genome accession: NZ_CP072847
• Coordinates: 2275125..2276501 (-)
• Length: 458 a.a.
• NCBI ID: WP_032074635.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain A1552
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2270125..2281501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J9265_RS10315 (J9265_10315)	-	2270968..2272653 (+)	1686	WP_000615853.1	AMP-binding protein	-
J9265_RS10320 (J9265_10320)	fusA	2272767..2274854 (-)	2088	WP_000774532.1	elongation factor G	-
J9265_RS10325 (J9265_10325)	radA/sms	2275125..2276501 (-)	1377	WP_032074635.1	DNA repair protein RadA	Machinery gene
J9265_RS10330 (J9265_10330)	-	2276632..2278971 (+)	2340	WP_001187860.1	PilZ domain-containing protein	-
J9265_RS10335 (J9265_10335)	serB	2279176..2280156 (-)	981	WP_000339682.1	phosphoserine phosphatase	-
J9265_RS10340 (J9265_10340)	-	2280259..2280882 (+)	624	WP_000349089.1	YtjB family periplasmic protein	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 49297.90 Da
• Isoelectric Point: 7.6828

>NTDB_id=485595 J9265_RS10325 WP_032074635.1 2275125..2276501(-) (radA/sms) [Vibrio cholerae strain A1552]
MVKAKRAYVCNECGADFPRWQGQCNACGSWNSISEVRLAASPQVARNERLVGYAGALEAKVQTLADIDLQEVPRFTSGFK
ELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQMPTLYVTGEESLQQVAMRASRLGLPKQHLKMLSETNVDRI
CQIAEQEKPRIMVIDSIQVMHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSIL
LDGDTDSRFRTLRSHKNRFGAVNELGVFAMTGQGMREVSNPSAIFLSRGEEATSGSSVMVVWEGTRPLLVEIQALVDYSQ
LANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALLMALLSSFRDRPLPKDVVVFGEVGL
AGEIRPVPSGQERLNEAFKHGFKKAIVPIANMPKGGIEGMQIHGVKKLSDAIAAFDEL

Nucleotide

• Length: 1377 bp

>NTDB_id=485595 J9265_RS10325 WP_032074635.1 2275125..2276501(-) (radA/sms) [Vibrio cholerae strain A1552]
ATTGTGAAAGCTAAGCGCGCCTATGTATGTAATGAATGTGGAGCGGATTTTCCGCGTTGGCAAGGACAGTGTAATGCCTG
TGGTTCGTGGAATTCGATTTCAGAAGTTCGTTTAGCGGCTTCACCGCAAGTGGCGCGCAATGAAAGGTTGGTCGGTTATG
CGGGAGCCCTTGAAGCGAAAGTACAAACTTTGGCTGATATTGATTTACAAGAAGTGCCTCGATTCACCAGTGGCTTTAAA
GAACTAGATCGCGTACTCGGCGGCGGAATTGTGCCGGGTGCGGCGATTTTGATTGGTGGTAATCCGGGCGCGGGTAAATC
GACCTTACTACTGCAAACCATGTGTTTACTTTCCGGACAAATGCCGACGTTGTACGTGACGGGCGAAGAATCGTTGCAGC
AGGTCGCGATGCGTGCTTCACGGCTTGGTTTGCCGAAACAGCATCTAAAAATGCTCTCAGAAACCAATGTGGATCGGATT
TGCCAGATTGCTGAGCAAGAAAAGCCGCGCATTATGGTCATCGATTCGATCCAAGTGATGCATGTGGCGGATGTGCAATC
GTCGCCGGGGAGTGTCGCGCAAGTGCGTGAATCGGCCACGGCGCTTACGCGTTATGCCAAACAAAATAATGTGGCGGTAT
TTATTGTGGGCCACGTAACCAAAGATGGTACGTTGGCGGGACCTAAAGTTCTTGAACACATCATCGATTGCTCGATTCTG
CTTGATGGTGATACAGACAGTCGTTTTCGTACACTTCGTAGTCATAAAAACCGTTTTGGTGCGGTCAATGAACTCGGTGT
GTTTGCGATGACTGGACAAGGGATGCGTGAGGTGAGTAATCCATCGGCGATTTTCCTTTCTCGTGGAGAAGAAGCCACAT
CTGGTAGCTCAGTGATGGTGGTGTGGGAAGGAACTCGCCCACTCTTAGTCGAGATTCAAGCTTTGGTCGATTACTCACAA
CTCGCTAACCCAAGACGCGTTGCGGTTGGCTTAGAACAAAACCGTCTCTCTTTATTACTGGCCGTGCTGCATAAACACGG
TGGTTTGCAAATGGCTGATCAGGATGTGTTTGTGAACGTAGTCGGTGGTGTGAAAGTGACGGAGACCAGTGCAGATTTAG
CGCTACTCATGGCGTTATTGTCGAGTTTTCGTGATCGTCCGCTGCCAAAAGATGTCGTGGTTTTTGGTGAAGTCGGATTG
GCTGGAGAAATTCGTCCCGTACCGAGTGGTCAAGAGCGCCTTAACGAAGCCTTCAAACATGGTTTTAAGAAAGCGATTGT
GCCGATTGCCAATATGCCGAAAGGTGGTATTGAAGGTATGCAGATCCACGGTGTGAAAAAGCTTTCTGATGCGATCGCGG
CTTTTGATGAGCTGTAA

Domains

Predicted by InterProScan.

• Subunit ChlI of Mg-chelatase (ChlI) (346-431)

• AAA domain (AAA_25) (81-223)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	43.818	100	0.441
radA	Streptococcus mitis NCTC 12261	45.093	93.45	0.421
radA	Streptococcus pneumoniae Rx1	45.093	93.45	0.421
radA	Streptococcus pneumoniae D39	45.093	93.45	0.421
radA	Streptococcus pneumoniae R6	45.093	93.45	0.421
radA	Streptococcus pneumoniae TIGR4	45.093	93.45	0.421
radA	Streptococcus mitis SK321	45.093	93.45	0.421