Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   I872_RS06770 Genome accession   NC_021175
Coordinates   1361969..1365256 (-) Length   1095 a.a.
NCBI ID   WP_015605395.1    Uniprot ID   A0ABN4B657
Organism   Streptococcus cristatus AS 1.3089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1356969..1370256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS06760 (I872_06770) - 1357162..1358160 (-) 999 WP_015605393.1 glycosyltransferase family 4 protein -
  I872_RS06765 (I872_06775) rexA 1358301..1361972 (-) 3672 WP_015605394.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I872_RS06770 (I872_06780) rexB 1361969..1365256 (-) 3288 WP_015605395.1 ATP-dependent nuclease subunit B Machinery gene
  I872_RS06775 (I872_06785) tuf 1365399..1366595 (-) 1197 WP_015605396.1 elongation factor Tu -
  I872_RS06780 (I872_06790) - 1366718..1367707 (-) 990 WP_015605397.1 anti sigma factor C-terminal domain-containing protein -
  I872_RS06785 (I872_06795) - 1367694..1368164 (-) 471 WP_172456459.1 RNA polymerase sigma factor -
  I872_RS06790 (I872_06800) - 1368448..1369362 (-) 915 WP_015605399.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 1095 a.a.        Molecular weight: 125301.76 Da        Isoelectric Point: 4.8676

>NTDB_id=48543 I872_RS06770 WP_015605395.1 1361969..1365256(-) (rexB) [Streptococcus cristatus AS 1.3089]
MKLLYTDIRSPLTAHLAKQAQDLAVAGKRVFYIAPNSLSFEKERAVLEELENQASFAITVTRFTQMARYFVLNDVQEGQP
LDDIGLGMLFYRILSEMDDRELKVYGRIKKDAQFIQQLLELYQELQTAQMTFADLNYLEEPEKREDLLKIFTVFSAALQA
GNYDATSKLTIFAQHILAGDLDGELANLALVIDGFTRFSAEEEYLVDLLHRKGVEIVIGVYASQKAYRTAFREGNLYQAS
VEFLLKLAQTYQVKPEYLADGSSQPDDAFGKISKILESRYDFSEIHVELTAEDRSHLEIWSVRNQKEELEYVAKSIRQRL
HDGARYKDIRLLLGDVEAYQLQMKTIFDQYQIPFYLGRSESMSQHPLVQFLESLERLKRYNFQTEDLLNLLKTGLYGGLS
QEELDSFEQYLRFAEIKGAAKLGRDFTINRQGKFDLKRLNVMRRSLITPLLDFFKSRSQIATGLLAKFTNFIKEVRLDAN
LMGLLEGASQQEVERQEEVWKTFCHVLEQLAQVFDGSKLKIDDFLALILSGMLLAKYRLVPATVDVVTVQSYDLIEPMAA
HYVYAIGLTQERLPKLAQNKSLLSDEERQKLNQATGDESELQVASSENLKKNRFAALSLLNSATEDLVLSAPVLINEVED
AMSSYLTELEIAPISLPIISKKPQASSDDIGTYRALLARVIDLYQEDIDREWTPEEQAFWAVAVRVLRKKLTAEGISIPQ
ISKELKTETLKSETLQALYPSEQPLKLSASALNEYFKNQYAYFLKYVLRLQEEWTIQPDARSHGIFLHRIFEKVMKEHLD
QDFDTRLQRAMEETSWEVEFETVYGENGETQFARRLLLDTARATGRILAQSDGLEIIGEETDFGQDDRPFLLLDNGRALQ
VSGKVDRIDRLTETGSLGVVDYKSGDTKFSFEKFFNGLNSQLPTYLAAIREMPEYQEDKGIFGAMYLQMTEPLASLKETK
ALDEAVKQVMKSQVYKGLFLADRAKDLGANYEKSKANLLTKEELEVVLTYNAYLYRQAAEGILAGRFSINPYTENGRSIA
PYVDQFKAITGFEANLHLGQARQLTKLNLEQYEKRPTGEKLRQVWLEKIKEELDK

Nucleotide


Download         Length: 3288 bp        

>NTDB_id=48543 I872_RS06770 WP_015605395.1 1361969..1365256(-) (rexB) [Streptococcus cristatus AS 1.3089]
ATGAAATTACTTTATACAGACATCCGCAGTCCTTTGACGGCACACTTAGCTAAGCAAGCTCAGGACTTGGCAGTGGCCGG
CAAGCGGGTCTTTTATATAGCGCCCAACTCGCTTTCTTTTGAAAAGGAGCGAGCAGTTTTGGAGGAATTGGAAAATCAGG
CTTCCTTTGCTATTACGGTGACGCGTTTTACCCAGATGGCTCGTTATTTTGTCCTCAATGATGTTCAAGAAGGACAGCCC
TTGGATGATATTGGTCTAGGCATGCTATTTTATCGGATTTTATCGGAAATGGATGACAGAGAGCTCAAGGTTTATGGGCG
GATTAAGAAGGATGCACAGTTTATCCAGCAACTGCTAGAACTTTATCAGGAGCTTCAGACCGCTCAGATGACTTTTGCGG
ATTTGAACTATCTAGAAGAGCCAGAGAAACGTGAGGATTTGCTCAAGATTTTCACAGTCTTTTCGGCTGCTCTTCAGGCG
GGAAATTATGATGCGACTTCTAAACTTACGATTTTCGCTCAGCATATTCTAGCTGGTGATTTGGATGGTGAATTGGCTAA
TCTTGCGTTGGTAATAGATGGCTTTACTCGGTTCTCGGCAGAAGAGGAGTATCTAGTAGATTTGCTGCATCGCAAGGGAG
TGGAGATTGTCATTGGTGTTTATGCTAGTCAAAAAGCCTATCGGACAGCCTTTCGTGAGGGCAATCTTTACCAGGCAAGC
GTGGAATTTTTGCTCAAGCTAGCTCAAACCTATCAGGTCAAGCCAGAGTATCTGGCAGATGGTTCGAGTCAGCCTGATGA
TGCCTTTGGCAAGATTTCCAAGATTTTAGAGAGTCGCTATGATTTTTCTGAAATCCATGTGGAATTGACTGCGGAGGATC
GCTCTCACCTAGAGATTTGGTCGGTGCGCAATCAAAAAGAAGAACTGGAATATGTGGCCAAGTCTATTCGTCAGAGGCTT
CATGATGGCGCCCGCTACAAGGATATCCGACTACTTTTAGGTGATGTGGAGGCCTACCAGCTCCAGATGAAGACCATCTT
TGACCAGTATCAGATTCCCTTTTATTTGGGGCGGTCTGAGTCCATGTCCCAGCATCCTTTGGTCCAGTTTTTAGAGTCAC
TGGAGCGCTTGAAACGCTATAATTTTCAGACAGAAGATTTACTCAATCTTTTAAAAACTGGCCTTTATGGTGGCTTGAGT
CAGGAGGAGCTGGATAGTTTTGAGCAGTACCTTCGATTTGCTGAGATTAAAGGGGCAGCTAAGCTAGGGAGAGATTTTAC
CATTAATCGTCAGGGGAAATTTGACCTCAAGCGGCTCAATGTCATGCGTCGGAGTCTTATCACGCCTCTGTTAGACTTTT
TCAAATCTCGTAGTCAGATAGCGACTGGTCTCTTGGCTAAATTTACCAACTTTATCAAGGAGGTTCGCTTGGATGCCAAT
CTGATGGGGCTGCTGGAAGGTGCAAGCCAGCAGGAAGTGGAACGGCAGGAGGAAGTCTGGAAGACTTTTTGTCATGTCTT
GGAGCAGCTTGCGCAGGTTTTTGACGGTAGCAAGCTCAAGATCGATGATTTTCTGGCTCTGATTCTGTCTGGTATGCTTT
TGGCTAAATACCGACTTGTACCAGCAACAGTGGATGTGGTGACCGTTCAATCCTACGATTTGATTGAGCCCATGGCTGCG
CATTATGTCTATGCTATCGGGCTGACGCAGGAGCGCTTGCCCAAGTTAGCGCAAAATAAAAGTCTGCTCAGTGACGAAGA
ACGTCAGAAATTAAATCAAGCGACTGGGGACGAGTCAGAGTTGCAGGTAGCCAGCAGTGAAAATCTCAAGAAAAATCGTT
TTGCCGCGCTATCCTTGCTCAATTCAGCGACAGAAGATTTGGTTTTGTCTGCCCCTGTCTTAATCAATGAAGTAGAAGAT
GCCATGTCTTCCTATCTGACAGAGCTGGAAATAGCGCCTATTTCCCTACCTATCATCAGCAAGAAACCGCAGGCTAGCAG
TGACGATATTGGGACTTATCGGGCTCTCTTGGCGCGCGTGATTGACCTTTATCAAGAAGATATTGACCGTGAATGGACGC
CGGAGGAACAGGCCTTCTGGGCAGTGGCGGTTCGAGTCTTACGCAAGAAGTTGACAGCTGAGGGAATTTCCATTCCCCAG
ATCAGCAAGGAATTGAAGACGGAGACTCTCAAGTCAGAAACCCTCCAAGCTCTTTATCCTTCAGAGCAGCCTTTGAAACT
GTCGGCTTCTGCCCTCAATGAATACTTTAAAAACCAGTATGCCTATTTTCTTAAGTATGTCTTGCGGCTGCAGGAGGAGT
GGACGATTCAGCCGGATGCGCGCAGTCACGGGATTTTCCTCCACCGAATCTTTGAAAAGGTTATGAAGGAGCACTTGGAT
CAGGACTTCGACACTCGCTTACAACGGGCAATGGAGGAGACTAGCTGGGAGGTTGAGTTTGAAACTGTCTATGGTGAAAA
TGGGGAGACCCAGTTTGCCCGTCGTTTACTATTGGACACAGCTCGAGCTACTGGTCGTATCTTGGCTCAGTCGGATGGGC
TGGAGATCATTGGTGAGGAGACTGACTTTGGTCAGGATGATCGGCCTTTCTTACTTTTGGACAATGGCAGAGCTCTTCAA
GTGAGCGGCAAGGTGGACCGAATTGATCGTCTGACGGAGACGGGGAGTCTGGGAGTCGTGGATTACAAGTCGGGCGATAC
CAAATTCAGCTTTGAGAAGTTCTTTAATGGGCTTAACTCTCAGTTGCCGACCTACCTAGCGGCTATCCGAGAAATGCCAG
AATACCAAGAAGACAAGGGAATTTTCGGAGCCATGTACCTACAGATGACGGAGCCCCTAGCCAGCCTCAAGGAAACTAAG
GCACTGGACGAGGCTGTAAAACAAGTTATGAAAAGTCAGGTTTACAAAGGCCTCTTTCTGGCTGATCGAGCCAAGGACTT
GGGCGCTAACTACGAGAAAAGCAAGGCTAATCTGCTGACTAAGGAAGAACTGGAAGTAGTTCTGACCTACAATGCTTATC
TATATCGACAAGCCGCAGAAGGCATTTTAGCTGGTCGTTTTTCCATCAATCCTTATACAGAAAATGGCCGCAGTATTGCC
CCTTATGTGGACCAGTTTAAGGCCATTACAGGCTTTGAAGCTAATCTCCATCTGGGGCAAGCTAGACAGCTGACCAAGTT
AAATCTTGAGCAGTACGAAAAACGGCCAACAGGCGAGAAGCTGCGTCAAGTCTGGCTAGAAAAAATCAAGGAGGAGTTGG
ACAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

55.445

100

0.558

Multiple sequence alignment