Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   I872_RS06765 Genome accession   NC_021175
Coordinates   1358301..1361972 (-) Length   1223 a.a.
NCBI ID   WP_015605394.1    Uniprot ID   A0ABN4B686
Organism   Streptococcus cristatus AS 1.3089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1353301..1366972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS06745 (I872_06755) - 1354568..1355176 (-) 609 WP_015605390.1 hypothetical protein -
  I872_RS06750 (I872_06760) - 1355445..1355810 (-) 366 WP_015605391.1 hypothetical protein -
  I872_RS06755 (I872_06765) - 1355847..1357160 (-) 1314 WP_015605392.1 glycosyltransferase family 4 protein -
  I872_RS06760 (I872_06770) - 1357162..1358160 (-) 999 WP_015605393.1 glycosyltransferase family 4 protein -
  I872_RS06765 (I872_06775) rexA 1358301..1361972 (-) 3672 WP_015605394.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I872_RS06770 (I872_06780) rexB 1361969..1365256 (-) 3288 WP_015605395.1 ATP-dependent nuclease subunit B Machinery gene
  I872_RS06775 (I872_06785) tuf 1365399..1366595 (-) 1197 WP_015605396.1 elongation factor Tu -

Sequence


Protein


Download         Length: 1223 a.a.        Molecular weight: 140373.97 Da        Isoelectric Point: 4.9394

>NTDB_id=48542 I872_RS06765 WP_015605394.1 1358301..1361972(-) (rexA) [Streptococcus cristatus AS 1.3089]
MRRIPFLNEQDILVKQAEEAASDKPQKRTPEQIQAIYSSGQNILVSASAGSGKTYVMVQRIIDQILRGVEVSQLFISTFT
VKAAGELKERLEKELSLVLKETSDQELRQHLAQQLAEIANADIGTMDAFTQKVVNKYGYLLGLAPHFRILQSASEQLILQ
NEVFDQLFDAYYDSNRQELFSRLVKNFTGKRKDIAGFRQQIYSIYSFLQSTSNPRKWLEETFLLGYETSDFEAERERMLA
GARQSLLDLEDFFQIHLAHEGQAFAGAKYQDNVQAALDILAELTEQTGSEQLLDLIQRFLELAKTSNHQAFTARVGKNAD
ELKKELAQAYNEARKPLIERIKELDVRLYHLNFMEQHQAEALPLLDLLRDFVRDFSQAYLERKVAENVFEFGDISHFAIE
ILENYPEVRRFYQDKYHEVMVDEYQDTNHTQERMLELLARGNNRFMVGDIKQSIYRFRQADPQIFNDKFKLYQADPSQGK
LIILKENFRSHIEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKREPNPANQAEFLLYDGSADSEEEDSDQGLPSI
SAGEVALVIKEIIRLHNQEGVDFRDMTLLTASRTRNDLILAEFDRHHIPIVPDDGETNYLQSVEVMVMLDTLRTINNPLN
DFALTALLKSPMFDFNEDELTRLALQASSTKSMENLYEKLRNALADQGLEPQLIHGELRKKLQHFQTTLDDWRSYSKTHS
LYDLIWKIYQDRFYYDMVGALPNGEQRQANLYALSLRANDYEKSSFKGLSRFISMIDRILKNEHDLASVPLAVPKNAVQL
MTIHKSKGLEFKYVFLLNMDKAFNLQDSSSAIILSRQKGIGIKYVADVDVEAQAPHAPKQIRISMETLPYQQNAEELKLA
SLSEQMRLLYVAMTRAETKLYLVGKGNQAKLQERKWGTSQNGRLSSSLRSQLTNFQDWLYAIQSVFEGENLAYQTRFVTD
QELTDEQIGVVEQTVSIPVDDLTGNRQSEDIRRALDILENVDRFNSLYQAAIELPSVRTPSQIKKFYEPVMESEGLDIMD
APRSYQPQLTFDLPDFGKKKQITGAQIGSAVHELMQRIPLDQPVTKTSIRQALAQVQADAAVKKEIDLAKIEAFFATELG
QLIQEQANHLHREAPFAMLKQDLASGQNFVVRGILDGYLLFDDRIVLFDYKTDRYHELTELVERYRSQLYLYAEALSRSY
GLSQVDKYLILLGGAELQVVKVD

Nucleotide


Download         Length: 3672 bp        

>NTDB_id=48542 I872_RS06765 WP_015605394.1 1358301..1361972(-) (rexA) [Streptococcus cristatus AS 1.3089]
ATGAGACGGATTCCCTTTTTAAACGAGCAGGATATCCTAGTCAAGCAGGCTGAGGAAGCTGCCTCTGACAAGCCACAAAA
GCGCACACCAGAGCAGATCCAAGCTATCTACTCCTCTGGTCAGAATATTCTCGTCTCAGCTTCGGCTGGATCTGGTAAGA
CCTATGTTATGGTTCAGCGGATTATTGACCAGATTCTCAGAGGTGTGGAGGTCAGCCAACTCTTCATCTCCACCTTTACT
GTCAAGGCGGCAGGTGAGCTCAAGGAACGGCTGGAGAAGGAGCTGAGTCTGGTACTCAAGGAGACTTCAGATCAGGAACT
TCGTCAGCATCTTGCTCAGCAGTTGGCTGAGATTGCAAATGCGGATATTGGCACCATGGATGCTTTTACCCAGAAAGTAG
TCAATAAGTACGGCTATTTGCTGGGGCTGGCACCGCATTTTCGGATTTTACAGTCGGCTAGTGAGCAGCTCATTCTGCAA
AATGAAGTCTTTGACCAGCTGTTTGATGCCTATTATGATAGTAATCGGCAGGAATTATTCAGCCGCTTGGTCAAAAATTT
CACTGGCAAGCGCAAGGACATTGCTGGTTTCCGCCAGCAGATTTATAGTATTTATAGTTTTCTCCAGTCTACCAGCAATC
CGCGGAAATGGTTGGAGGAAACCTTTCTTCTAGGCTATGAAACCAGTGATTTTGAAGCAGAGCGGGAGCGAATGCTGGCT
GGAGCTAGGCAGTCTCTGCTGGATTTAGAAGATTTTTTCCAGATCCATCTAGCTCATGAAGGCCAAGCCTTTGCTGGGGC
TAAGTATCAGGACAATGTTCAGGCAGCCTTAGATATCTTGGCTGAGCTGACAGAGCAGACTGGATCTGAGCAGTTGCTAG
ACCTAATTCAGCGCTTTTTAGAATTAGCCAAGACCTCTAACCATCAGGCTTTTACTGCCCGAGTTGGTAAAAATGCGGAC
GAACTTAAAAAAGAGCTGGCTCAAGCCTATAATGAAGCCCGTAAGCCTTTGATAGAGCGAATTAAAGAGCTGGATGTCCG
CCTCTATCATCTGAACTTTATGGAGCAACATCAGGCGGAAGCTCTTCCCCTACTGGATTTGTTACGCGATTTTGTCCGAG
ATTTCTCGCAAGCTTATTTGGAACGAAAAGTAGCGGAAAATGTCTTTGAATTTGGGGATATCAGTCATTTTGCTATTGAA
ATTTTAGAAAATTATCCAGAAGTGCGGCGTTTCTATCAGGACAAGTACCATGAGGTCATGGTCGATGAGTACCAAGACAC
CAACCATACTCAGGAGCGAATGCTGGAATTGCTGGCTCGAGGAAATAATCGCTTTATGGTCGGCGATATTAAGCAGTCCA
TCTATCGATTCCGTCAGGCCGATCCGCAGATTTTTAACGATAAATTTAAACTCTATCAGGCCGATCCTAGTCAGGGCAAG
CTGATCATTCTCAAGGAAAATTTCCGTAGTCACATCGAGGTGCTGGAAGCGACCAATGATGTCTTTAAACGACTCATGGA
CGAGGAAGTCGGCGAGATTGACTACAATGAGACCCACTACTTGGTGGCGGGAAATCCAGCCAAACGGGAGCCGAATCCAG
CCAATCAGGCAGAATTTCTGCTTTATGACGGTAGCGCTGATAGCGAAGAAGAGGATTCTGACCAAGGTCTGCCCAGCATT
TCAGCTGGTGAGGTAGCTTTGGTAATCAAGGAGATCATCCGCCTTCATAATCAAGAAGGGGTGGATTTCAGGGACATGAC
CTTGCTGACAGCTTCGCGGACCCGCAATGATCTGATATTGGCAGAGTTTGACCGACATCATATCCCGATTGTGCCTGATG
ATGGCGAGACTAATTATCTCCAGTCGGTAGAGGTTATGGTGATGCTGGATACCTTGCGAACCATTAACAATCCTCTCAAT
GACTTTGCTCTGACTGCCCTTCTCAAGTCGCCGATGTTTGACTTTAATGAGGACGAATTAACTCGGCTAGCCTTGCAAGC
CTCCAGTACCAAGTCTATGGAAAATCTCTACGAAAAGCTGAGGAATGCTCTGGCTGATCAAGGTCTGGAACCTCAGCTCA
TACATGGTGAATTGCGCAAGAAACTGCAGCATTTCCAGACAACGCTGGATGACTGGCGCAGCTATTCCAAGACCCATTCT
CTCTATGATTTAATCTGGAAGATTTATCAAGATCGTTTTTACTACGATATGGTAGGGGCTCTGCCCAATGGCGAACAGCG
TCAGGCTAATCTCTATGCCCTGTCCTTACGGGCCAACGACTACGAAAAGTCGAGTTTCAAGGGGCTGTCCCGCTTTATCA
GCATGATTGACCGGATTTTGAAAAATGAGCACGATTTGGCTAGTGTCCCTCTAGCTGTTCCGAAAAATGCTGTCCAACTA
ATGACCATCCATAAGAGTAAGGGTTTAGAGTTCAAATATGTCTTTCTGCTAAATATGGACAAGGCCTTCAATCTTCAGGA
TAGCAGCTCTGCTATTATCCTCAGCCGACAAAAAGGCATCGGAATCAAATATGTGGCTGATGTGGATGTTGAGGCTCAGG
CTCCTCATGCGCCCAAGCAGATCCGCATTTCCATGGAGACCCTACCCTATCAGCAGAATGCCGAAGAACTCAAGCTGGCT
AGCCTGTCTGAGCAGATGCGTCTGCTCTATGTGGCCATGACGCGGGCTGAAACCAAGCTCTATCTTGTCGGCAAGGGCAA
CCAAGCTAAGCTCCAAGAGCGCAAGTGGGGGACTAGCCAAAATGGTCGCTTATCCAGCAGCCTTCGTAGCCAGCTGACCA
ATTTTCAGGATTGGCTCTATGCCATCCAGTCTGTGTTTGAGGGGGAAAATCTGGCTTATCAAACTCGCTTTGTGACTGAT
CAGGAGCTGACAGACGAGCAGATTGGCGTAGTGGAGCAGACTGTTTCCATTCCGGTAGATGATTTGACGGGCAACCGTCA
GTCAGAGGATATTCGCCGGGCTCTGGATATCTTGGAGAATGTAGACCGGTTTAACAGTCTTTATCAAGCGGCTATTGAAC
TGCCAAGTGTCCGCACACCTAGTCAAATCAAGAAGTTCTATGAGCCAGTGATGGAGTCAGAAGGGCTGGACATTATGGAT
GCGCCTCGAAGCTATCAGCCCCAGCTGACTTTTGACTTGCCTGATTTTGGCAAGAAGAAGCAAATCACAGGAGCCCAAAT
CGGTTCTGCTGTTCATGAGCTCATGCAGCGGATTCCACTGGATCAGCCTGTCACTAAGACTAGCATTCGCCAAGCCTTGG
CTCAGGTTCAGGCAGATGCAGCAGTTAAGAAAGAGATTGACTTAGCTAAGATTGAAGCCTTTTTCGCTACAGAACTAGGT
CAGCTAATCCAGGAGCAGGCTAATCATCTCCATCGTGAAGCACCTTTTGCCATGCTCAAGCAGGATCTAGCCAGCGGTCA
AAACTTTGTCGTTCGGGGAATCTTGGATGGCTACCTGCTCTTTGATGATCGCATTGTCCTCTTTGACTATAAGACTGACC
GCTATCATGAGCTGACAGAGTTGGTGGAGCGCTACCGATCTCAACTGTATCTCTATGCCGAAGCCCTCAGTCGTTCCTAT
GGCCTTAGCCAAGTAGACAAGTATTTGATTCTACTAGGGGGAGCTGAGCTGCAAGTGGTCAAGGTGGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

57.856

99.918

0.578