Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BAMOH1_RS16530 Genome accession   NZ_CP061853
Coordinates   3421200..3422585 (-) Length   461 a.a.
NCBI ID   WP_072177037.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MOH1-5b     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3416200..3427585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMOH1_RS16495 (BAMOH1_16495) flgL 3416375..3417292 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  BAMOH1_RS16500 (BAMOH1_16500) flgK 3417304..3418821 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  BAMOH1_RS16505 (BAMOH1_16505) - 3418837..3419319 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BAMOH1_RS16510 (BAMOH1_16510) flgM 3419334..3419600 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAMOH1_RS16515 (BAMOH1_16515) - 3419670..3420089 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  BAMOH1_RS16520 (BAMOH1_16520) comFC 3420163..3420852 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  BAMOH1_RS16525 (BAMOH1_16525) - 3420858..3421142 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAMOH1_RS16530 (BAMOH1_16530) comFA 3421200..3422585 (-) 1386 WP_072177037.1 DEAD/DEAH box helicase Machinery gene
  BAMOH1_RS16535 (BAMOH1_16535) - 3422693..3423541 (-) 849 WP_072177036.1 DegV family protein -
  BAMOH1_RS16540 (BAMOH1_16540) degU 3423639..3424328 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAMOH1_RS16545 (BAMOH1_16545) degS 3424405..3425568 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAMOH1_RS16550 (BAMOH1_16550) - 3425791..3426438 (+) 648 WP_191389245.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52686.16 Da        Isoelectric Point: 10.3124

>NTDB_id=485313 BAMOH1_RS16530 WP_072177037.1 3421200..3422585(-) (comFA) [Bacillus amyloliquefaciens strain MOH1-5b]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=485313 BAMOH1_RS16530 WP_072177037.1 3421200..3422585(-) (comFA) [Bacillus amyloliquefaciens strain MOH1-5b]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTTTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGTAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACTAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGCTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625