Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J8617_RS00535 Genome accession   NZ_CP072802
Coordinates   112245..113672 (-) Length   475 a.a.
NCBI ID   WP_000980583.1    Uniprot ID   -
Organism   Escherichia coli strain PK5074     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 107245..118672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8617_RS00505 (J8617_00505) yeeZ 107300..108124 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  J8617_RS00510 (J8617_00510) yeeY 108170..109099 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  J8617_RS00515 (J8617_00515) yoeI 109314..109376 (+) 63 WP_010723108.1 membrane protein YoeI -
  J8617_RS00520 (J8617_00520) plaP 109366..110724 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  J8617_RS00525 (J8617_00525) tsuA 110903..111961 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  J8617_RS00530 (J8617_00530) tsuB 111975..112202 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  J8617_RS00535 (J8617_00535) sbcB 112245..113672 (-) 1428 WP_000980583.1 exodeoxyribonuclease I Machinery gene
  J8617_RS00540 (J8617_00540) dacD 113881..115047 (+) 1167 WP_001351771.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  J8617_RS00545 (J8617_00545) sbmC 115166..115639 (+) 474 WP_001105408.1 DNA gyrase inhibitor SbmC -
  J8617_RS00550 (J8617_00550) yeeA 115837..116895 (+) 1059 WP_001200891.1 FUSC family protein -
  J8617_RS00555 (J8617_00555) tmaR 117067..117396 (+) 330 WP_000450409.1 DUF496 family protein -
  J8617_RS00560 (J8617_00560) - 117497..117679 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  J8617_RS00565 (J8617_00565) - 117733..117879 (+) 147 Protein_112 transposase domain-containing protein -
  J8617_RS26180 - 118168..118248 (-) 81 Protein_113 hypothetical protein -
  J8617_RS00570 (J8617_00570) yeeW 118294..118488 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4700

>NTDB_id=485312 J8617_RS00535 WP_000980583.1 112245..113672(-) (sbcB) [Escherichia coli strain PK5074]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFAHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=485312 J8617_RS00535 WP_000980583.1 112245..113672(-) (sbcB) [Escherichia coli strain PK5074]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTGCCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581