Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BAMOH1_RS14610 Genome accession   NZ_CP061853
Coordinates   3014070..3014714 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus amyloliquefaciens strain MOH1-5b     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3009070..3019714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMOH1_RS14575 (BAMOH1_14575) - 3010255..3010686 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  BAMOH1_RS14580 (BAMOH1_14580) - 3010686..3011027 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BAMOH1_RS14585 (BAMOH1_14585) - 3011020..3012501 (+) 1482 WP_021495363.1 Na+/H+ antiporter subunit D -
  BAMOH1_RS14590 (BAMOH1_14590) - 3012507..3012983 (+) 477 WP_022553708.1 Na+/H+ antiporter subunit E -
  BAMOH1_RS14595 (BAMOH1_14595) - 3012983..3013267 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BAMOH1_RS14600 (BAMOH1_14600) mnhG 3013251..3013625 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BAMOH1_RS14605 (BAMOH1_14605) - 3013665..3014048 (-) 384 WP_014418761.1 hotdog fold thioesterase -
  BAMOH1_RS14610 (BAMOH1_14610) comA 3014070..3014714 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  BAMOH1_RS14615 (BAMOH1_14615) comP 3014795..3017101 (-) 2307 WP_191389162.1 sensor histidine kinase Regulator
  BAMOH1_RS14620 (BAMOH1_14620) comX 3017124..3017300 (-) 177 WP_095273329.1 competence pheromone ComX -
  BAMOH1_RS14625 (BAMOH1_14625) - 3017319..3018194 (-) 876 WP_095273351.1 polyprenyl synthetase family protein -
  BAMOH1_RS14630 (BAMOH1_14630) degQ 3018346..3018486 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BAMOH1_RS14635 (BAMOH1_14635) - 3018951..3019292 (+) 342 WP_021495366.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=485307 BAMOH1_RS14610 WP_014418762.1 3014070..3014714(-) (comA) [Bacillus amyloliquefaciens strain MOH1-5b]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=485307 BAMOH1_RS14610 WP_014418762.1 3014070..3014714(-) (comA) [Bacillus amyloliquefaciens strain MOH1-5b]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTTCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86