Detailed information NTG0485076

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: H2514_RS02005
• Genome accession: NZ_CP061847
• Coordinates: 478955..480433 (-)
• Length: 492 a.a.
• NCBI ID: WP_036192019.1
• Uniprot ID: -
• Organism: Lysobacter sp. CW239
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 473955..485433

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H2514_RS01995 (H2514_01995)	-	474014..476197 (-)	2184	WP_052103262.1	peptidoglycan DD-metalloendopeptidase family protein	-
H2514_RS02000 (H2514_02000)	-	476205..478820 (-)	2616	WP_036192017.1	type VI secretion system Vgr family protein	-
H2514_RS02005 (H2514_02005)	pilR	478955..480433 (-)	1479	WP_036192019.1	sigma-54 dependent transcriptional regulator	Regulator
H2514_RS02010 (H2514_02010)	-	480477..482117 (-)	1641	WP_052103263.1	HAMP domain-containing sensor histidine kinase	-
H2514_RS02015 (H2514_02015)	sucC	482404..483564 (+)	1161	WP_036192021.1	ADP-forming succinate--CoA ligase subunit beta	-
H2514_RS02020 (H2514_02020)	sucD	483689..484564 (+)	876	WP_036192023.1	succinate--CoA ligase subunit alpha	-
H2514_RS02025 (H2514_02025)	-	485120..485351 (+)	232	Protein_401	DUF559 domain-containing protein	-

Sequence

Protein

• Length: 492 a.a.
• Molecular weight: 53171.71 Da
• Isoelectric Point: 6.6079

>NTDB_id=485076 H2514_RS02005 WP_036192019.1 478955..480433(-) (pilR) [Lysobacter sp. CW239]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASSLSDARAQLARNRYDLCLTDMRLPDGSGIDLIAEISQQHPQTPVA
MITAFGNVDAAVEALKAGAFDFVAKPVELSVLRDLVRHALELKEKPAVVHSPDTVATRLYGESPAMEQLRQTIAKVARSQ
APVYIAGESGVGKELVARTIHSEGGRATGPFVPVNCGAIPSELMESEFFGHKKGSFTGAHADKPGLFQSADGGTLFLDEV
AELPLAMQVKLLRAIQEKSIKPVGANAEIVVDVRILSATHKNLAAMVADGRFRQDLYYRINVIELRVPPLRERLEDLPGL
CAKILQRLAADLDRPAPSLSGDAVEALRHYAFPGNVRELENILERALALADGDHLDAHDLRLPNHPAIASSHGTPPLSTG
PFATTTHHPVPGNSPQPPHTPQAAAAAAGIDPRTIDPRDTATSALPSYIEEIERAAIQHALQENRYNKTRTAAALGITFR
ALRYKLKKLGID

Nucleotide

• Length: 1479 bp

>NTDB_id=485076 H2514_RS02005 WP_036192019.1 478955..480433(-) (pilR) [Lysobacter sp. CW239]
ATGGCTGAGACACGTAGTGCATTGGTGGTCGACGACGAGCGGGACATCCGCGAATTGCTGGTCATGACCCTTGGCCGCAT
GGGCCTGCGGTGCGATACCGCATCCAGCCTGTCCGACGCCCGGGCCCAGCTGGCACGCAACAGGTACGACCTGTGCCTGA
CCGACATGCGCCTGCCGGACGGCTCGGGCATCGACCTGATCGCCGAAATCAGCCAGCAGCACCCCCAGACCCCGGTCGCG
ATGATCACCGCGTTCGGCAACGTCGACGCCGCGGTGGAAGCCCTCAAGGCCGGCGCGTTCGACTTCGTCGCCAAGCCGGT
CGAGCTGTCCGTGCTGCGCGACCTGGTCCGCCATGCGCTGGAGCTGAAGGAAAAGCCCGCCGTCGTCCACAGCCCGGACA
CGGTCGCCACCCGCCTGTACGGCGAGTCGCCCGCGATGGAGCAGCTGCGCCAGACCATCGCCAAGGTCGCCCGCAGCCAG
GCCCCGGTCTATATCGCCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCCCGCACGATCCACTCCGAAGGCGGCCGCGC
CACCGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATTCCATCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGG
GCAGCTTCACCGGCGCCCATGCCGACAAGCCCGGCCTGTTCCAGAGCGCCGACGGCGGCACCCTGTTCCTGGACGAGGTC
GCCGAACTGCCGCTGGCAATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGATCAAGCCGGTCGGCGCCAATGC
CGAGATCGTGGTCGACGTGCGCATCCTGTCGGCCACCCACAAGAACCTCGCCGCGATGGTGGCCGATGGCCGCTTCCGGC
AGGACCTCTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGTCTGGAAGACCTGCCCGGCCTG
TGCGCGAAGATCCTCCAGCGGCTGGCCGCCGACCTCGACCGCCCCGCTCCGAGCCTGTCCGGCGATGCGGTCGAGGCGCT
CCGCCATTACGCCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAGCGCGCCCTGGCCCTGGCCGACGGCGACC
ACCTCGACGCCCACGACCTGCGCCTGCCGAACCACCCGGCAATTGCCTCGTCGCATGGCACGCCGCCGCTGAGCACCGGC
CCGTTCGCCACCACCACACACCACCCCGTACCCGGCAACAGCCCACAGCCGCCGCACACCCCCCAGGCCGCTGCCGCCGC
GGCCGGCATCGACCCGCGCACGATCGACCCGCGCGACACCGCCACCAGCGCCCTGCCCTCCTACATCGAGGAGATCGAGC
GCGCCGCCATCCAGCACGCCCTGCAGGAAAACCGCTACAACAAGACCCGCACCGCCGCCGCGCTGGGCATCACCTTCCGC
GCGCTGCGCTACAAGCTGAAGAAGCTCGGAATCGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (449-489)

• Sigma-54 interaction domain (Sigma54_activat) (140-305)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.836	99.187	0.593
pilR	Acinetobacter baumannii strain A118	46.906	100	0.478