Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   IF132_RS17325 Genome accession   NZ_CP061845
Coordinates   2505230..2505844 (-) Length   204 a.a.
NCBI ID   WP_039430441.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 2540-90     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2500230..2510844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF132_RS17315 (IF132_18380) aceF 2501471..2503387 (+) 1917 WP_039430443.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  IF132_RS17320 (IF132_18385) lpdA 2503643..2505070 (+) 1428 WP_039430442.1 dihydrolipoyl dehydrogenase -
  IF132_RS17325 (IF132_18390) opaR 2505230..2505844 (-) 615 WP_039430441.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  IF132_RS17330 (IF132_18395) hpt 2506236..2506766 (+) 531 WP_039430440.1 hypoxanthine phosphoribosyltransferase -
  IF132_RS17335 (IF132_18400) can 2506881..2507549 (-) 669 WP_039430439.1 carbonate dehydratase -
  IF132_RS17340 (IF132_18405) - 2507786..2509444 (+) 1659 WP_039430438.1 SulP family inorganic anion transporter -
  IF132_RS17345 (IF132_18410) - 2509596..2510519 (+) 924 WP_039430437.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23492.92 Da        Isoelectric Point: 6.3361

>NTDB_id=485059 IF132_RS17325 WP_039430441.1 2505230..2505844(-) (opaR) [Vibrio navarrensis strain 2540-90]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAQDNLKNITNAMIELVTQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFVRAIERGEVCDKHSPE
DLANMFLGICYSLFVQANRAKSEAELTKLVNSYLQMLCIYKGES

Nucleotide


Download         Length: 615 bp        

>NTDB_id=485059 IF132_RS17325 WP_039430441.1 2505230..2505844(-) (opaR) [Vibrio navarrensis strain 2540-90]
ATGGACTCAATAGCAAAGAGACCTCGAACTCGTTTATCTCCACTGAAACGTAAACAACAACTGATGGAAATCGCACTGGA
AGTGTTTGCTCGTCGTGGCATCGGCCGCGGTGGTCACGCAGACATCGCCGAGATTGCACAAGTTTCTGTCGCCACCGTAT
TTAACTATTTTCCGACACGTGAAGATCTGGTTGATGAAGTGCTCAATCATGTCGTGCGTCAGTTTTCAAACTTCCTGTCC
GATAACATTGACCTCGACATTCACGCGCAAGATAACCTCAAAAACATCACCAACGCGATGATTGAACTGGTGACTCAAGA
CTGCCATTGGCTCAAAGTGTGGTTTGAATGGAGCGCATCAACGCGTGATGAAGTATGGCCACTATTTGTCACCACCAACC
GCACTAACCAACTGCTGGTACAGAACATGTTTGTTCGCGCCATCGAGCGTGGCGAAGTGTGTGATAAACACAGCCCGGAA
GATCTGGCGAATATGTTCCTTGGTATCTGCTACTCACTGTTTGTGCAAGCCAATCGCGCCAAGAGCGAAGCGGAACTGAC
CAAACTGGTCAACAGCTACCTACAAATGCTTTGTATCTATAAGGGTGAGAGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

88.67

99.51

0.882
  hapR Vibrio cholerae C6706

71.859

97.549

0.701
  hapR Vibrio cholerae strain A1552

71.859

97.549

0.701