Detailed information NTG0485057

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IF132_RS17275
• Genome accession: NZ_CP061845
• Coordinates: 2491385..2492254 (-)
• Length: 289 a.a.
• NCBI ID: WP_039430450.1
• Uniprot ID: -
• Organism: Vibrio navarrensis strain 2540-90
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2486385..2497254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF132_RS17240 (IF132_18305)	rpsP	2487522..2487770 (+)	249	WP_011079541.1	30S ribosomal protein S16	-
IF132_RS17245 (IF132_18310)	rimM	2487785..2488333 (+)	549	WP_039430456.1	ribosome maturation factor RimM	-
IF132_RS17250 (IF132_18315)	trmD	2488361..2489110 (+)	750	WP_039430455.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
IF132_RS17255 (IF132_18320)	rplS	2489153..2489506 (+)	354	WP_039430454.1	50S ribosomal protein L19	-
IF132_RS17260 (IF132_18325)	yacG	2489723..2489917 (-)	195	WP_039430453.1	DNA gyrase inhibitor YacG	-
IF132_RS17265 (IF132_18330)	zapD	2490002..2490742 (-)	741	WP_039430452.1	cell division protein ZapD	-
IF132_RS17270 (IF132_18335)	coaE	2490775..2491383 (-)	609	WP_039430451.1	dephospho-CoA kinase	-
IF132_RS17275 (IF132_18340)	pilD	2491385..2492254 (-)	870	WP_039430450.1	prepilin peptidase	Machinery gene
IF132_RS17280 (IF132_18345)	-	2492394..2493619 (-)	1226	Protein_2127	type II secretion system F family protein	-
IF132_RS17285 (IF132_18350)	pilB	2493641..2495329 (-)	1689	WP_039430449.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IF132_RS17290 (IF132_18355)	-	2495330..2495803 (-)	474	WP_039430448.1	pilin	-
IF132_RS17295 (IF132_18360)	nadC	2496019..2496906 (-)	888	WP_039430447.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32303.51 Da
• Isoelectric Point: 7.8837

>NTDB_id=485057 IF132_RS17275 WP_039430450.1 2491385..2492254(-) (pilD) [Vibrio navarrensis strain 2540-90]
MDALHYYPWLYVGLAALFGLIVGSFLNVVIYRLPKMMELEWQRECADAFPQYAIPAPKETLTLSTPRSTCPTCHTPIRIR
DNIPLLSWFLLKGRCHQCQSKISGRYPAVELLSATLCALVAWKFGYSLYSLALLFFTFTLIAATFIDLDTMLLPDQLTLP
LTWSGIALALLEISPVSLQNSVIGAMAGYLCLWSVYHLFRLMTGKEGMGYGDFKLLAALGAWLGWQSLLMIILLSSVVGL
VFGLIQLRLQKQGIEKAFPFGPYLAIAGWVALMWGESLMSWYFSVMMGA

Nucleotide

• Length: 870 bp

>NTDB_id=485057 IF132_RS17275 WP_039430450.1 2491385..2492254(-) (pilD) [Vibrio navarrensis strain 2540-90]
ATGGATGCATTGCACTACTATCCTTGGCTGTATGTTGGCCTAGCGGCGTTATTTGGCTTGATTGTCGGTAGCTTTCTCAA
CGTGGTTATCTATCGCTTGCCGAAAATGATGGAACTGGAGTGGCAACGGGAATGTGCCGATGCCTTTCCTCAATACGCCA
TCCCTGCGCCGAAGGAAACTCTCACTCTTAGCACGCCGCGTTCCACTTGCCCAACGTGCCATACGCCGATTCGTATCCGC
GATAACATTCCGCTGCTGAGTTGGTTTTTGCTCAAAGGGCGCTGTCATCAGTGTCAAAGCAAGATCAGTGGCCGCTATCC
AGCAGTTGAGCTGCTCAGCGCAACCCTATGCGCCTTGGTGGCGTGGAAATTTGGCTACAGCCTTTACTCGCTGGCACTGC
TGTTTTTCACCTTTACCTTGATCGCTGCGACCTTTATCGATCTCGATACCATGCTATTACCAGATCAACTGACCCTGCCT
TTAACTTGGTCCGGTATTGCCCTTGCGCTGCTGGAAATCAGCCCTGTCTCTTTGCAAAACTCGGTGATTGGCGCCATGGC
AGGCTACCTCTGCCTTTGGTCTGTCTATCACCTTTTCCGTCTGATGACAGGCAAAGAAGGCATGGGGTATGGCGATTTTA
AGTTATTGGCAGCGCTCGGTGCTTGGCTAGGCTGGCAATCACTTCTGATGATCATTTTGCTCTCTTCGGTGGTTGGGCTA
GTCTTTGGCCTGATCCAACTTCGCTTACAAAAACAGGGCATCGAAAAAGCGTTTCCTTTTGGCCCCTATCTCGCCATCGC
CGGCTGGGTCGCATTGATGTGGGGCGAGTCGTTAATGAGTTGGTATTTCAGCGTAATGATGGGGGCGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.048	100	0.74
pilD	Vibrio cholerae strain A1552	67.708	99.654	0.675
pilD	Acinetobacter nosocomialis M2	51.273	95.156	0.488
pilD	Acinetobacter baumannii D1279779	50.545	95.156	0.481
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443