Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   IF132_RS03530 Genome accession   NZ_CP061844
Coordinates   807050..808228 (-) Length   392 a.a.
NCBI ID   WP_039427668.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 2540-90     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 802050..813228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF132_RS03515 (IF132_03495) - 802865..804001 (-) 1137 WP_039427674.1 fatty acid desaturase -
  IF132_RS03520 (IF132_03500) - 804156..804704 (+) 549 WP_039427671.1 GNAT family N-acetyltransferase -
  IF132_RS03525 (IF132_03505) cqsS 804966..807011 (+) 2046 WP_039427670.1 hybrid sensor histidine kinase/response regulator Regulator
  IF132_RS03530 (IF132_03510) cqsA 807050..808228 (-) 1179 WP_039427668.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  IF132_RS03535 (IF132_03515) ylqF 808502..809446 (-) 945 WP_039427666.1 ribosome biogenesis GTPase YlqF -
  IF132_RS03540 (IF132_03520) - 809781..810737 (+) 957 WP_039427664.1 AEC family transporter -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 43633.86 Da        Isoelectric Point: 6.4977

>NTDB_id=485022 IF132_RS03530 WP_039427668.1 807050..808228(-) (cqsA) [Vibrio navarrensis strain 2540-90]
MNNMFPKQLPEFITNRLLFQVEDLIHSNKSKTHLVMGKSPESDSIIMQSNDYLSIANHPEIKQVHTDAINKCDASVVMSA
IFLQSEKSKPNFEKQLASYTEMSSCLLSQSGWAANIGLLQTICAPTTPVYIDFFTHMSLWEGARIADAAIHPFMHNNLNH
LIKQVERYGAGIIIVDSVYSTIGTVAPLKELCDIAERYGCAIIVDESHSLGTHGPQGAGLVKELELTSKVDFITVSLAKS
FAYRAGAILGHELISQTLPFVAYPAIFSSTLLPYEIDRLEKTLEIVRGSDERRAQVGRLARQLRLGLKQIGFQVRSQSQI
VAIETADERNTEHVRDYLEDNGIFGSVFCRPATGKNKNIIRFSINASLSEQDIEKTIEVCRSAYQSGQFTFV

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=485022 IF132_RS03530 WP_039427668.1 807050..808228(-) (cqsA) [Vibrio navarrensis strain 2540-90]
ATGAATAACATGTTTCCTAAACAATTACCTGAATTTATAACAAATCGATTATTATTTCAGGTAGAAGACCTGATTCATAG
TAACAAGAGCAAAACACATTTAGTCATGGGTAAAAGCCCAGAAAGTGATTCGATAATCATGCAGAGCAATGATTATTTAT
CAATTGCCAATCATCCAGAAATCAAACAGGTTCATACTGATGCAATAAATAAATGCGATGCTAGTGTTGTCATGTCGGCT
ATATTTTTGCAAAGCGAAAAGAGCAAACCCAATTTTGAAAAGCAGCTCGCCAGCTATACCGAGATGTCATCTTGTCTACT
GTCGCAATCAGGCTGGGCAGCCAATATTGGTCTTTTGCAGACTATTTGTGCCCCCACAACCCCTGTCTACATTGACTTCT
TTACCCATATGTCACTTTGGGAAGGAGCGCGTATCGCAGATGCGGCCATCCATCCCTTTATGCATAACAACCTCAATCAC
CTGATTAAACAGGTTGAACGCTACGGTGCTGGGATCATCATCGTTGATTCTGTCTACAGCACAATTGGCACTGTCGCACC
GCTCAAGGAGCTGTGTGACATCGCAGAAAGATATGGATGCGCCATTATCGTCGATGAGTCTCACTCGTTGGGAACGCACG
GTCCACAAGGTGCGGGATTAGTCAAAGAGCTAGAACTGACTAGTAAAGTTGACTTTATTACTGTCAGCCTAGCCAAGTCG
TTTGCTTATCGGGCCGGGGCGATTCTTGGCCACGAGCTCATCTCACAAACTCTGCCGTTTGTTGCCTACCCGGCGATATT
CAGCTCTACTTTGCTGCCATATGAAATCGACAGATTAGAGAAAACACTGGAAATTGTTCGGGGAAGTGATGAAAGAAGAG
CCCAAGTCGGACGCTTGGCAAGACAGCTTCGTCTAGGGCTCAAGCAGATCGGTTTTCAAGTTCGCAGCCAATCTCAAATT
GTCGCCATTGAAACGGCCGATGAGCGGAACACCGAGCATGTGCGAGACTATTTAGAGGACAACGGTATTTTTGGCTCAGT
ATTTTGTCGTCCAGCAACAGGAAAAAATAAGAATATCATCCGATTTTCTATTAACGCATCACTTAGCGAACAAGATATAG
AAAAAACAATAGAAGTGTGCCGCTCGGCTTATCAATCTGGACAATTTACCTTTGTCTAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

59.021

98.98

0.584