Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   IF132_RS03525 Genome accession   NZ_CP061844
Coordinates   804966..807011 (+) Length   681 a.a.
NCBI ID   WP_039427670.1    Uniprot ID   A0A099LWE8
Organism   Vibrio navarrensis strain 2540-90     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 799966..812011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF132_RS03505 (IF132_03485) - 799976..800986 (+) 1011 WP_039427677.1 substrate-binding domain-containing protein -
  IF132_RS03510 (IF132_03490) - 801827..802804 (+) 978 WP_039429056.1 chemotaxis protein -
  IF132_RS03515 (IF132_03495) - 802865..804001 (-) 1137 WP_039427674.1 fatty acid desaturase -
  IF132_RS03520 (IF132_03500) - 804156..804704 (+) 549 WP_039427671.1 GNAT family N-acetyltransferase -
  IF132_RS03525 (IF132_03505) cqsS 804966..807011 (+) 2046 WP_039427670.1 hybrid sensor histidine kinase/response regulator Regulator
  IF132_RS03530 (IF132_03510) cqsA 807050..808228 (-) 1179 WP_039427668.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  IF132_RS03535 (IF132_03515) ylqF 808502..809446 (-) 945 WP_039427666.1 ribosome biogenesis GTPase YlqF -
  IF132_RS03540 (IF132_03520) - 809781..810737 (+) 957 WP_039427664.1 AEC family transporter -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78367.85 Da        Isoelectric Point: 6.6335

>NTDB_id=485021 IF132_RS03525 WP_039427670.1 804966..807011(+) (cqsS) [Vibrio navarrensis strain 2540-90]
MESIRKVYQYANPNLTLVGWMGFLGFPTYYWVWTHLFPQSYENLPLRLLCSALFLLLVLRERLPMPIRTRMPIVYLIVIT
TCLPFFFFFMLLMNEWSNVWVMSFMAAIFLHILLVHMTKVMFSQTFIGVGMAVLAAYVCNDFHLVISVDWRHVPIFLFIY
LFGNLFYFRNQVEHESRISIAKAFGAGIAHEMRNPLSGLVASIDVIQSVLPNDKVEKRSSYALSAKDVALLREVSEEAMK
IIHSGNETIDLLLTSIDENRVSRSTFKRHSANEVVKNAIESFSYKKAADRQCIRYHEEGQFEFFGSHTLLKYVIYNLVKN
AFNYRNPDVFTIDITISRDETENMITVRDNGQGIAPASMEHIFKDFYTTGKSGNYGLGLPFCKKVMRSFGGTIACQSEQG
HWTEFTLTFPLVKSKVVGEIKYELMKLKSVFFISEQELLCKKMVESARSSGFALTIKTAEQACLMAEYEFEYDLIFLDLS
SVDLKNSQLDRLESLLHFTEARIVYLYQDAIVNRRNQSTLPLLWVETQSWLLNTAQIIDRLMFDANFDAYMPAPVRKSDD
GKRVIMVVDDNDSLRKFTSLLLEKQGFEVIQREDGQEAIQALDKHHVDLILMDIEMPILDGIEASIQIRQSNQKYAHVPI
IAHTGDSTPVTLERINQSGMSDYLVKPADKNKLLDKISHWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=485021 IF132_RS03525 WP_039427670.1 804966..807011(+) (cqsS) [Vibrio navarrensis strain 2540-90]
ATGGAATCGATTCGCAAGGTTTATCAATACGCTAACCCTAATTTGACGCTTGTCGGCTGGATGGGGTTTCTCGGCTTTCC
GACCTACTACTGGGTTTGGACGCATCTTTTTCCTCAGTCTTACGAGAATCTTCCGCTCAGGCTACTTTGTTCAGCTTTAT
TCTTGCTGCTGGTTTTGCGAGAGCGCTTACCCATGCCGATCCGCACGCGTATGCCCATCGTCTATTTGATAGTGATAACG
ACCTGTTTGCCTTTTTTCTTCTTTTTTATGCTGTTGATGAATGAATGGTCGAACGTTTGGGTCATGTCTTTTATGGCGGC
GATTTTCTTACACATCCTGTTAGTCCATATGACTAAGGTGATGTTTAGTCAAACATTTATCGGCGTTGGCATGGCGGTGC
TTGCGGCGTATGTGTGCAATGACTTCCATCTGGTGATTTCCGTCGACTGGCGTCATGTGCCGATATTTCTCTTTATCTAT
CTGTTTGGCAACTTATTCTATTTTCGCAATCAAGTTGAACATGAATCACGGATTTCGATCGCCAAAGCGTTTGGTGCCGG
AATCGCCCATGAAATGCGCAATCCGTTGAGCGGCTTGGTTGCTTCTATCGATGTGATCCAATCAGTGCTTCCCAACGATA
AAGTTGAGAAACGCAGCAGCTACGCGTTAAGTGCCAAAGACGTCGCTTTACTACGAGAAGTGAGTGAAGAAGCAATGAAG
ATTATCCATTCGGGCAATGAGACGATTGATCTGCTTTTGACTTCGATTGATGAAAATCGTGTCTCTCGCTCAACCTTTAA
GCGGCATTCGGCCAATGAGGTAGTAAAAAATGCCATTGAGAGCTTTAGTTATAAAAAAGCCGCAGACAGGCAGTGCATTC
GTTACCACGAGGAAGGGCAGTTTGAATTTTTCGGTAGCCACACGTTACTGAAGTACGTCATCTATAACCTTGTTAAAAAT
GCGTTTAACTATCGCAATCCCGATGTGTTCACCATTGATATTACGATAAGTCGCGATGAAACAGAGAACATGATTACCGT
GCGAGACAACGGGCAGGGAATTGCGCCAGCGTCGATGGAACATATTTTCAAGGACTTCTATACCACAGGAAAAAGCGGTA
ACTATGGTTTAGGATTGCCATTTTGTAAAAAGGTGATGCGATCATTTGGTGGCACTATCGCTTGTCAATCGGAGCAAGGG
CACTGGACGGAGTTTACGCTGACGTTTCCGTTGGTGAAATCTAAAGTAGTTGGTGAAATAAAATATGAGCTGATGAAACT
CAAGTCGGTCTTTTTTATCAGTGAGCAAGAGCTCTTGTGTAAAAAAATGGTGGAATCAGCCCGCTCAAGTGGTTTCGCTC
TCACGATAAAAACGGCCGAGCAAGCGTGCTTAATGGCCGAATATGAATTTGAATATGATCTTATTTTTCTTGATTTGAGT
TCGGTCGACTTAAAAAACAGCCAGTTAGATAGGCTAGAATCTTTATTACATTTTACCGAAGCACGCATTGTTTACTTGTA
TCAGGATGCGATAGTCAATCGCCGCAACCAAAGTACATTACCGCTATTGTGGGTGGAAACGCAATCTTGGTTACTCAATA
CGGCACAGATTATCGACAGACTCATGTTTGACGCGAACTTTGATGCTTACATGCCCGCTCCGGTCAGAAAATCCGACGAT
GGCAAGCGGGTGATTATGGTGGTTGACGATAATGATTCGCTGCGCAAGTTCACCTCATTGCTATTGGAGAAACAGGGTTT
TGAAGTGATTCAAAGAGAAGATGGTCAGGAAGCGATTCAGGCATTAGATAAACATCATGTTGATCTCATTTTGATGGATA
TTGAAATGCCGATATTAGATGGTATAGAAGCGTCAATTCAGATCCGTCAGTCAAATCAAAAATATGCCCATGTCCCAATT
ATTGCTCATACTGGTGACAGCACTCCTGTGACACTGGAGAGAATTAATCAGTCAGGTATGTCTGATTATTTAGTTAAACC
CGCCGATAAAAATAAGTTACTAGATAAAATATCGCACTGGATATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-411)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099LWE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.123

100

0.493