Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I0P58_RS17415 Genome accession   NZ_CP072784
Coordinates   3687057..3687794 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain JA0266     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3682057..3692794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P58_RS17400 (I0P58_17400) clpC 3682511..3685084 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  I0P58_RS17405 (I0P58_17405) yfiH 3685214..3685945 (-) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  I0P58_RS17410 (I0P58_17410) rluD 3685942..3686922 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I0P58_RS17415 (I0P58_17415) comL 3687057..3687794 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I0P58_RS17420 (I0P58_17420) raiA 3688065..3688406 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I0P58_RS17425 (I0P58_17425) pheL 3688510..3688557 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I0P58_RS17430 (I0P58_17430) pheA 3688656..3689816 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  I0P58_RS17435 (I0P58_17435) tyrA 3689859..3690980 (-) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I0P58_RS17440 (I0P58_17440) aroF 3690991..3692061 (-) 1071 WP_001168027.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I0P58_RS17445 (I0P58_17445) yfiL 3692271..3692636 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=485019 I0P58_RS17415 WP_000197686.1 3687057..3687794(+) (comL) [Escherichia coli strain JA0266]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=485019 I0P58_RS17415 WP_000197686.1 3687057..3687794(+) (comL) [Escherichia coli strain JA0266]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376