Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   IF130_RS11640 Genome accession   NZ_CP061840
Coordinates   2629235..2629939 (+) Length   234 a.a.
NCBI ID   WP_015961431.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain AW-13-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2624235..2634939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF130_RS11615 (IF130_11615) - 2625466..2626344 (+) 879 WP_015961428.1 lpg2327 family Dot/Icm T4SS effector -
  IF130_RS11620 (IF130_11620) lem22 2626609..2626992 (+) 384 WP_014842288.1 Dot/Icm T4SS effector Lem22 -
  IF130_RS11625 (IF130_11625) - 2627186..2627416 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  IF130_RS11630 (IF130_11630) - 2627397..2628293 (+) 897 WP_015961429.1 polyprenyl synthetase family protein -
  IF130_RS11635 (IF130_11635) bioC 2628337..2629191 (-) 855 WP_015961430.1 malonyl-ACP O-methyltransferase BioC -
  IF130_RS11640 (IF130_11640) comFC 2629235..2629939 (+) 705 WP_015961431.1 ComF family protein Machinery gene
  IF130_RS11645 (IF130_11645) - 2629968..2631041 (-) 1074 WP_014844482.1 RIP metalloprotease -
  IF130_RS11650 (IF130_11650) - 2631098..2631376 (-) 279 WP_010948040.1 hypothetical protein -
  IF130_RS11655 (IF130_11655) - 2631394..2631570 (+) 177 WP_014844483.1 hypothetical protein -
  IF130_RS11660 (IF130_11660) hemA 2631694..2632968 (+) 1275 WP_015444133.1 glutamyl-tRNA reductase -
  IF130_RS11665 (IF130_11665) prfA 2632952..2634040 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  IF130_RS11670 (IF130_11670) prmC 2634033..2634896 (+) 864 WP_014844485.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26744.34 Da        Isoelectric Point: 9.2792

>NTDB_id=484987 IF130_RS11640 WP_015961431.1 2629235..2629939(+) (comFC) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVPPVTYEHVMIVDDLLTTGSTANEIAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=484987 IF130_RS11640 WP_015961431.1 2629235..2629939(+) (comFC) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAACTTGGATCTTGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGTGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTT
GAAGAGCCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCTTTTCTAAAACAATTACT
TCTTAATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGCCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTACC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATAGCACATACAT
TAAAAAATGCCGGGGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAGAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

100

100

1
  comFC Legionella pneumophila strain ERS1305867

100

83.761

0.838