Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   IF130_RS09770 Genome accession   NZ_CP061840
Coordinates   2184610..2184924 (-) Length   104 a.a.
NCBI ID   WP_011214248.1    Uniprot ID   A0A3A6V5J7
Organism   Legionella pneumophila subsp. pneumophila strain AW-13-4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2179610..2189924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF130_RS09745 (IF130_09745) - 2180035..2180535 (-) 501 WP_011214243.1 hypothetical protein -
  IF130_RS09750 (IF130_09750) - 2181027..2181887 (+) 861 WP_011214244.1 polysaccharide deacetylase family protein -
  IF130_RS09755 (IF130_09755) - 2182005..2183201 (-) 1197 WP_011214245.1 murein transglycosylase A -
  IF130_RS09760 (IF130_09760) lpp1976 2183311..2183868 (-) 558 WP_011214246.1 hypothetical protein Machinery gene
  IF130_RS09765 (IF130_09765) lpp1977 2183865..2184671 (-) 807 WP_011214247.1 PilW family protein Machinery gene
  IF130_RS09770 (IF130_09770) lpp1978 2184610..2184924 (-) 315 WP_011214248.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  IF130_RS09775 (IF130_09775) hisC 2185084..2186193 (+) 1110 WP_011214249.1 histidinol-phosphate transaminase -
  IF130_RS09780 (IF130_09780) - 2186230..2186571 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  IF130_RS09785 (IF130_09785) secF 2186749..2187666 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  IF130_RS09790 (IF130_09790) secD 2187679..2189535 (-) 1857 WP_011214250.1 protein translocase subunit SecD -
  IF130_RS09795 (IF130_09795) yajC 2189557..2189892 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12267.42 Da        Isoelectric Point: 10.0591

>NTDB_id=484984 IF130_RS09770 WP_011214248.1 2184610..2184924(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
MSKHKGFTLMEVLMSLMLMTTVVLMLVDQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=484984 IF130_RS09770 WP_011214248.1 2184610..2184924(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTATGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGATCAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A6V5J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila str. Paris

100

100

1
  lpp1978 Legionella pneumophila strain ERS1305867

98.077

100

0.981