Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   IF130_RS09760 Genome accession   NZ_CP061840
Coordinates   2183311..2183868 (-) Length   185 a.a.
NCBI ID   WP_011214246.1    Uniprot ID   A0A3A6V8Y1
Organism   Legionella pneumophila subsp. pneumophila strain AW-13-4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2178311..2188868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF130_RS09735 (IF130_09735) - 2178463..2179086 (-) 624 WP_025519768.1 hypothetical protein -
  IF130_RS09740 (IF130_09740) - 2179305..2179955 (-) 651 WP_011214242.1 lysoplasmalogenase -
  IF130_RS09745 (IF130_09745) - 2180035..2180535 (-) 501 WP_011214243.1 hypothetical protein -
  IF130_RS09750 (IF130_09750) - 2181027..2181887 (+) 861 WP_011214244.1 polysaccharide deacetylase family protein -
  IF130_RS09755 (IF130_09755) - 2182005..2183201 (-) 1197 WP_011214245.1 murein transglycosylase A -
  IF130_RS09760 (IF130_09760) lpp1976 2183311..2183868 (-) 558 WP_011214246.1 hypothetical protein Machinery gene
  IF130_RS09765 (IF130_09765) lpp1977 2183865..2184671 (-) 807 WP_011214247.1 PilW family protein Machinery gene
  IF130_RS09770 (IF130_09770) lpp1978 2184610..2184924 (-) 315 WP_011214248.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  IF130_RS09775 (IF130_09775) hisC 2185084..2186193 (+) 1110 WP_011214249.1 histidinol-phosphate transaminase -
  IF130_RS09780 (IF130_09780) - 2186230..2186571 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  IF130_RS09785 (IF130_09785) secF 2186749..2187666 (-) 918 WP_010947716.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21657.03 Da        Isoelectric Point: 6.7382

>NTDB_id=484982 IF130_RS09760 WP_011214246.1 2183311..2183868(-) (lpp1976) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
MKKTDSGFILLMTLCITFLMSLLVLASLQQIFLQYKALNSQETFHQNFYQLEHWMMRLAHSPLLYAGMDCYLQKDYGANK
IANELVNNKGCLLILNQRKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDEEHGESAIMQLRFIKLGSNLSSCPEE
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=484982 IF130_RS09760 WP_011214246.1 2183311..2183868(-) (lpp1976) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
ATGAAAAAAACCGATTCCGGTTTCATTCTGTTAATGACGCTCTGTATAACTTTCTTGATGAGCTTATTAGTTTTGGCAAG
CCTCCAACAGATATTCTTGCAATACAAAGCACTCAATTCACAGGAGACATTTCATCAAAATTTTTATCAGTTGGAACATT
GGATGATGCGACTCGCTCATTCACCGTTATTGTATGCAGGTATGGATTGTTATCTGCAAAAGGATTATGGAGCTAATAAA
ATAGCAAACGAGTTAGTTAACAATAAAGGATGTTTGCTCATATTAAATCAGAGAAAATACAGATATTTTATTGAGGACCT
GAACGAATTTTCTTGTTTGGTTCTTAATAAGGATGGGCAAAAATATGCTTCTCACCATTTTAGGTTCACCGTATTACAAG
ACGAGGAACATGGCGAATCTGCTATCATGCAATTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAGGAG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCAGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A6V8Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila str. Paris

100

100

1
  lpp1976 Legionella pneumophila strain ERS1305867

98.919

100

0.989