Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   I872_RS01675 Genome accession   NC_021175
Coordinates   325731..326777 (+) Length   348 a.a.
NCBI ID   WP_015604427.1    Uniprot ID   A0ABM5NI36
Organism   Streptococcus cristatus AS 1.3089     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 320731..331777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS01655 (I872_01565) trxA 323079..323393 (+) 315 WP_015604423.1 thioredoxin -
  I872_RS10745 - 323882..324176 (+) 295 Protein_307 IS3 family transposase -
  I872_RS01660 (I872_01570) - 324232..324507 (-) 276 WP_015604424.1 hypothetical protein -
  I872_RS01665 (I872_01575) - 324517..324927 (-) 411 WP_015604425.1 HIT family protein -
  I872_RS01670 (I872_01580) pptA 325003..325734 (+) 732 WP_015604426.1 ABC transporter ATP-binding protein Regulator
  I872_RS01675 (I872_01585) pptB 325731..326777 (+) 1047 WP_015604427.1 ABC transporter permease Regulator
  I872_RS01680 (I872_01590) ccrZ 326828..327622 (+) 795 WP_015604428.1 cell cycle regulator CcrZ -
  I872_RS01685 (I872_01595) trmB 327619..328257 (+) 639 WP_015604429.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 40505.85 Da        Isoelectric Point: 10.3893

>NTDB_id=48494 I872_RS01675 WP_015604427.1 325731..326777(+) (pptB) [Streptococcus cristatus AS 1.3089]
MKEVFAKRKQDFRQRCLKYLRYVLNDHFVLFLLIFLGFLAVQYNQLLRNFPSQSWPIIVGLVLFSVLILPFGGIATYLEK
PDMLFLLVQEQAVIEFVKGQIQRSYILFGLLQTLLLLLLAPLFLALGLPIWGFGLYCLLMLLLKWLVFQFKGRRFFLVDR
LDWQFAIAAEEGRKQKVLRFFALFTNVKGISNSVKRRAYLDGLTRLLPKIHAKTWQNMFLRSYLRNGDLFPLTLRLLLLA
LLTIAFVSQPWIAAGFVVLFNYLLLFQLLALYEAFDYQYLTQLFPLDSRSKIKGSRQVITGIGYSVLLFETLVAALCFQD
KIAVLALLGMTTFLYLVYLPYKLKRLVD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=48494 I872_RS01675 WP_015604427.1 325731..326777(+) (pptB) [Streptococcus cristatus AS 1.3089]
ATGAAAGAAGTATTTGCTAAACGCAAGCAGGATTTCCGTCAGCGCTGCCTGAAGTATTTGCGCTATGTTCTCAATGATCA
CTTTGTCCTGTTTTTATTGATTTTTCTCGGATTTCTGGCGGTTCAGTACAATCAATTGCTGCGGAATTTCCCTAGTCAGT
CTTGGCCGATAATAGTAGGATTAGTCTTGTTTTCTGTGCTCATTCTTCCTTTTGGCGGTATTGCAACCTATCTGGAGAAG
CCAGACATGCTCTTCTTGCTGGTGCAGGAGCAGGCAGTCATTGAGTTTGTTAAGGGACAAATCCAGCGGTCTTATATCCT
CTTTGGCCTACTACAAACCTTGTTGCTGCTTTTGTTAGCGCCCCTGTTTTTGGCTCTAGGTTTGCCAATCTGGGGCTTTG
GGCTGTACTGTCTCCTTATGTTATTGCTAAAATGGCTAGTCTTTCAGTTCAAGGGACGTCGCTTTTTCTTGGTTGACCGC
CTCGATTGGCAGTTTGCAATTGCAGCTGAGGAAGGGCGCAAGCAGAAAGTTCTTCGTTTCTTCGCCCTCTTTACAAATGT
AAAAGGCATTTCCAATAGTGTTAAAAGAAGAGCTTACTTGGACGGGCTGACGAGACTTTTGCCTAAGATCCATGCCAAGA
CTTGGCAAAATATGTTTCTGCGCTCTTATCTTCGCAATGGCGATCTATTCCCTCTGACCTTGCGTCTCCTGCTTTTAGCC
CTGCTGACAATTGCTTTTGTTAGCCAGCCTTGGATTGCTGCAGGTTTTGTCGTCCTATTCAACTATCTGTTGCTCTTTCA
GTTGCTGGCCTTGTATGAAGCCTTTGATTATCAGTATCTAACCCAGCTTTTCCCGCTGGATAGCAGGTCTAAAATCAAGG
GATCAAGACAGGTTATTACAGGGATTGGATACAGTGTCTTACTGTTTGAAACGCTAGTAGCAGCGCTTTGTTTTCAAGAT
AAAATAGCTGTGCTAGCATTGCTTGGGATGACGACCTTCTTGTATCTTGTCTATTTGCCATATAAGCTGAAAAGATTGGT
TGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(160-329)

Bacterial ABC transporter protein EcsB (EcsB)

(2-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.414

100

0.474
  pptB Streptococcus salivarius strain HSISS4

47.414

100

0.474

Multiple sequence alignment