Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | IC779_RS08660 | Genome accession | NZ_CP061828 |
| Coordinates | 1808220..1808600 (+) | Length | 126 a.a. |
| NCBI ID | WP_019458993.1 | Uniprot ID | - |
| Organism | Acinetobacter seifertii strain AS42 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1803220..1813600
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IC779_RS08630 (IC779_08630) | kdsB | 1804125..1804886 (+) | 762 | WP_049064951.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| IC779_RS08635 (IC779_08635) | - | 1804898..1805878 (+) | 981 | WP_077168508.1 | DNA polymerase III subunit delta' | - |
| IC779_RS08640 (IC779_08640) | - | 1805891..1806232 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| IC779_RS08645 (IC779_08645) | - | 1806250..1807023 (+) | 774 | WP_077168509.1 | TatD family hydrolase | - |
| IC779_RS08650 (IC779_08650) | - | 1807061..1807669 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| IC779_RS08655 (IC779_08655) | - | 1807679..1808230 (+) | 552 | WP_004701984.1 | type II secretion system protein | - |
| IC779_RS08660 (IC779_08660) | xcpV | 1808220..1808600 (+) | 381 | WP_019458993.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| IC779_RS08665 (IC779_08665) | xcpW | 1808600..1809415 (+) | 816 | WP_077168510.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| IC779_RS08670 (IC779_08670) | gspK | 1809415..1810371 (+) | 957 | WP_077168511.1 | type II secretion system minor pseudopilin GspK | - |
| IC779_RS08675 (IC779_08675) | - | 1810601..1811197 (+) | 597 | WP_077168512.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| IC779_RS08680 (IC779_08680) | ung | 1811248..1811961 (+) | 714 | WP_077168513.1 | uracil-DNA glycosylase | - |
| IC779_RS08685 (IC779_08685) | - | 1811958..1813082 (+) | 1125 | WP_019458997.1 | enoyl-CoA hydratase/isomerase family protein | - |
| IC779_RS08690 (IC779_08690) | tadA | 1813090..1813592 (+) | 503 | Protein_1701 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13976.19 Da Isoelectric Point: 9.4463
>NTDB_id=484886 IC779_RS08660 WP_019458993.1 1808220..1808600(+) (xcpV) [Acinetobacter seifertii strain AS42]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=484886 IC779_RS08660 WP_019458993.1 1808220..1808600(+) (xcpV) [Acinetobacter seifertii strain AS42]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTGGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGTACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTGGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGTACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
96.032 |
100 |
0.96 |