Detailed information NTG0484860

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: J7U34_RS10050
• Genome accession: NZ_CP072778
• Coordinates: 1920871..1921971 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain S24748
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1915871..1926971

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U34_RS10025 (J7U34_09995)	pgsA	1916413..1916955 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
J7U34_RS10030 (J7U34_10000)	-	1916968..1917825 (-)	858	WP_014608803.1	helix-turn-helix transcriptional regulator	-
J7U34_RS10035 (J7U34_10005)	yfmH	1917884..1919161 (-)	1278	WP_011226704.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
J7U34_RS10040 (J7U34_10010)	yfmF	1919163..1920413 (-)	1251	WP_011681762.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
J7U34_RS10045 (J7U34_10015)	yaaA	1920491..1920868 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
J7U34_RS10050 (J7U34_10020)	recF	1920871..1921971 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
J7U34_RS10055 (J7U34_10025)	guaB	1922140..1923621 (-)	1482	WP_259699863.1	IMP dehydrogenase	-
J7U34_RS10060 (J7U34_10030)	trpS	1923798..1924820 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
J7U34_RS10065 (J7U34_10035)	-	1925248..1926120 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=484860 J7U34_RS10050 WP_002947786.1 1920871..1921971(+) (recF) [Streptococcus thermophilus strain S24748]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=484860 J7U34_RS10050 WP_002947786.1 1920871..1921971(+) (recF) [Streptococcus thermophilus strain S24748]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432