Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   I872_RS00185 Genome accession   NC_021175
Coordinates   29371..31317 (-) Length   648 a.a.
NCBI ID   WP_015604178.1    Uniprot ID   A0ABM5NH52
Organism   Streptococcus cristatus AS 1.3089     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 24371..36317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS00160 (I872_00090) - 24876..25841 (+) 966 WP_015604173.1 ribose-phosphate diphosphokinase -
  I872_RS00165 (I872_00095) - 25966..27138 (+) 1173 WP_015604174.1 pyridoxal phosphate-dependent aminotransferase -
  I872_RS00170 (I872_00100) recO 27131..27928 (+) 798 WP_015604175.1 DNA repair protein RecO Machinery gene
  I872_RS00175 (I872_00105) plsX 27909..28913 (+) 1005 WP_015604176.1 phosphate acyltransferase PlsX -
  I872_RS00180 (I872_00110) - 28910..29152 (+) 243 WP_015604177.1 acyl carrier protein -
  I872_RS00185 (I872_00115) lytF 29371..31317 (-) 1947 WP_015604178.1 GBS Bsp-like repeat-containing protein Regulator
  I872_RS00190 (I872_00120) purD 31693..32958 (+) 1266 WP_015604179.1 phosphoribosylamine--glycine ligase -
  I872_RS00195 (I872_00125) purE 33183..33671 (+) 489 WP_015604180.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  I872_RS00200 (I872_00130) purK 33658..34749 (+) 1092 WP_015604181.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  I872_RS00205 (I872_00135) - 34751..35014 (+) 264 WP_002931759.1 hypothetical protein -
  I872_RS00210 (I872_00140) - 35035..35262 (+) 228 WP_015604182.1 hypothetical protein -
  I872_RS00215 (I872_00145) - 35266..35958 (+) 693 WP_015604183.1 aspartate/glutamate racemase family protein -
  I872_RS00220 (I872_00150) - 35961..36056 (+) 96 Protein_30 phosphoribosylaminoimidazole carboxylase -

Sequence

Protein


Download         Length: 648 a.a.        Molecular weight: 71556.27 Da        Isoelectric Point: 8.5260

>NTDB_id=48483 I872_RS00185 WP_015604178.1 29371..31317(-) (lytF) [Streptococcus cristatus AS 1.3089]
MKKYQKLFLLSGAVLGLFASHSTVQAVASTEAGNKVLGPTDRASNVTVNVTGDTAQIHYARSKAQVPYTISHAVWSDENG
QDDLKWYTTPQTSSTAVDLRQHAGYGTLHVHTYININGKMIGLNGTTFTVNKPASKTSVTTSGQIGRINFTRNKDQGNSK
IVHAVWSDENGGDDLNWYEAGQESTEFNFSKHKGYGKYFVDTYENKNGKMIYQSGTTFHLEKPNPTIQTSFPEPGIMEIL
IKNLPDTMYKVTVPTWSENKGQDDLQWYEASKNSDGSYRVRVELKKHNYDTGTYHIHLYGESYVKPEFTGLAGTTATIDV
GKLPSPEEQKPLFSVENINPEQGTYTVKISETSTSKPIQSVRVPIWSTHKQSNIKWYEASNNGDGTFTAQFNIRNHQALS
GNYINHIYVKYKDGSEHSYATDSVTLSAENIKARVSVNKISAYNYEVTVSDAFGPGTISLPTWSEVNGQDDIKWYTANKV
GDGLYKFTINTQQHAGNGLFHTHVYRNLNGQMTGLTGTSYQVQKPTTPEPTLYTPDYAGASSYPHGQCTWGAKVLAPWAG
PYWGNGGQWAASARAAGFRTGSTPQVGAIICWTDGGYGHVGVVTHVESNTRIQIKESNYAGKQYIGNFRGWFNPYAAGQG
AVSYIYPK

Nucleotide


Download         Length: 1947 bp        

>NTDB_id=48483 I872_RS00185 WP_015604178.1 29371..31317(-) (lytF) [Streptococcus cristatus AS 1.3089]
ATGAAGAAATATCAGAAGCTGTTTTTATTATCCGGAGCAGTCCTTGGGCTATTTGCCAGTCATTCCACGGTTCAAGCTGT
TGCATCGACTGAAGCTGGGAATAAAGTCCTAGGTCCCACTGATCGTGCCAGCAATGTAACCGTCAATGTCACTGGGGATA
CGGCACAGATTCATTACGCCCGCTCCAAGGCTCAGGTTCCCTATACCATTTCCCACGCGGTCTGGTCCGACGAAAATGGG
CAGGATGATTTGAAATGGTACACTACGCCTCAAACATCCAGCACAGCCGTTGACCTTCGGCAGCACGCTGGCTACGGCAC
CTTACATGTGCACACTTACATTAATATCAATGGGAAAATGATTGGCTTGAATGGCACTACCTTCACTGTTAATAAACCTG
CTAGCAAGACAAGCGTCACAACATCTGGACAAATCGGCCGAATCAATTTTACGCGAAATAAAGACCAAGGGAACTCAAAA
ATTGTCCATGCAGTTTGGTCTGATGAAAATGGTGGCGATGACCTTAATTGGTATGAAGCTGGGCAAGAGAGTACTGAATT
TAACTTTTCTAAGCACAAGGGATATGGAAAATATTTCGTAGATACTTATGAAAATAAAAATGGCAAAATGATTTACCAAT
CAGGTACCACTTTCCATCTCGAAAAGCCTAATCCGACCATTCAGACAAGCTTCCCTGAACCTGGCATTATGGAAATCCTT
ATCAAAAATCTTCCTGACACCATGTACAAGGTCACTGTGCCAACTTGGTCTGAAAACAAAGGTCAGGATGATTTGCAATG
GTACGAGGCAAGTAAAAATTCTGATGGCAGTTACAGAGTAAGAGTAGAACTGAAGAAACACAATTACGATACAGGAACCT
ACCATATCCATCTCTACGGTGAAAGCTATGTCAAGCCTGAATTTACAGGATTAGCAGGAACAACTGCTACGATAGATGTC
GGAAAGCTGCCTTCCCCAGAAGAGCAAAAACCGCTTTTCTCTGTTGAAAATATCAATCCTGAGCAGGGAACCTATACTGT
AAAAATCAGTGAGACTTCAACATCTAAGCCAATTCAGTCCGTTCGCGTTCCCATCTGGAGCACCCATAAACAAAGCAATA
TCAAATGGTATGAGGCAAGTAATAATGGAGATGGGACCTTTACTGCACAATTTAATATTCGCAACCACCAAGCCTTATCT
GGCAATTATATCAATCATATCTACGTCAAATATAAAGATGGCAGCGAACATAGCTATGCGACAGACAGCGTCACTCTCTC
TGCTGAAAATATCAAAGCCAGGGTTTCTGTCAATAAAATATCTGCCTACAATTACGAAGTGACCGTTTCCGATGCTTTTG
GCCCAGGAACCATTTCTCTACCAACTTGGTCAGAGGTCAATGGCCAGGATGACATCAAATGGTACACTGCTAACAAAGTG
GGCGATGGCTTGTATAAATTTACCATCAATACGCAACAGCATGCTGGAAATGGACTCTTCCATACCCATGTTTACCGTAA
TCTCAATGGTCAGATGACTGGACTTACAGGCACCAGCTATCAGGTTCAAAAACCAACTACGCCTGAGCCAACCCTCTACA
CCCCTGATTATGCGGGAGCCTCCTCTTATCCTCATGGTCAGTGTACTTGGGGAGCAAAAGTATTGGCTCCTTGGGCTGGT
CCTTACTGGGGCAACGGTGGCCAATGGGCAGCTAGCGCACGCGCAGCTGGTTTCCGAACAGGAAGCACACCACAAGTCGG
AGCCATCATCTGCTGGACCGATGGTGGTTATGGGCATGTCGGTGTTGTCACCCATGTCGAATCCAACACCCGCATCCAAA
TCAAAGAATCCAACTATGCGGGCAAACAGTATATTGGCAACTTCCGCGGCTGGTTCAATCCCTACGCCGCTGGTCAAGGA
GCTGTCAGCTATATCTATCCAAAATAA

Domains

Predicted by InterProScan.

GBS Bsp-like repeat (GBS_Bsp-like)

(438-519)

GBS Bsp-like repeat (GBS_Bsp-like)

(155-216)

GBS Bsp-like repeat (GBS_Bsp-like)

(233-302)

GBS Bsp-like repeat (GBS_Bsp-like)

(335-421)

GBS Bsp-like repeat (GBS_Bsp-like)

(69-127)

CHAP domain (CHAP)

(541-618)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

44.487

81.173

0.361

Multiple sequence alignment