Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I872_RS00170 Genome accession   NC_021175
Coordinates   27131..27928 (+) Length   265 a.a.
NCBI ID   WP_015604175.1    Uniprot ID   A0ABM5NH84
Organism   Streptococcus cristatus AS 1.3089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 22131..32928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS00150 (I872_00080) mreD 22836..23336 (+) 501 WP_015604171.1 rod shape-determining protein MreD -
  I872_RS00155 (I872_00085) pcsB 23435..24622 (+) 1188 WP_015604172.1 peptidoglycan hydrolase PcsB -
  I872_RS00160 (I872_00090) - 24876..25841 (+) 966 WP_015604173.1 ribose-phosphate diphosphokinase -
  I872_RS00165 (I872_00095) - 25966..27138 (+) 1173 WP_015604174.1 pyridoxal phosphate-dependent aminotransferase -
  I872_RS00170 (I872_00100) recO 27131..27928 (+) 798 WP_015604175.1 DNA repair protein RecO Machinery gene
  I872_RS00175 (I872_00105) plsX 27909..28913 (+) 1005 WP_015604176.1 phosphate acyltransferase PlsX -
  I872_RS00180 (I872_00110) - 28910..29152 (+) 243 WP_015604177.1 acyl carrier protein -
  I872_RS00185 (I872_00115) lytF 29371..31317 (-) 1947 WP_015604178.1 GBS Bsp-like repeat-containing protein Regulator

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 30641.91 Da        Isoelectric Point: 5.7729

>NTDB_id=48482 I872_RS00170 WP_015604175.1 27131..27928(+) (recO) [Streptococcus cristatus AS 1.3089]
MLRPLTSKSLILYNRNFREDDKLVKIFTEQAGKRMFFVKHAGKSKLAPVIQPLTTAELLMKINDDGLSYIEDYQAVESYG
QIKSDLFVMAYASYVAALADASIQDNQPDPALFAFLQKTLDLMNQGLDYEVLTNIFEIQILSRFGVSLNFHDCVFCHRTG
LPFDFSFQYGGVLCPEHYHKDAHRSHLNPNIPFLLNQFQAVQFSELETISLKPEIKRQIRDFIDQLYDEYVGIHLKSKKF
IDSLGDWGSILQDKHEEEQHEKNSY

Nucleotide


Download         Length: 798 bp        

>NTDB_id=48482 I872_RS00170 WP_015604175.1 27131..27928(+) (recO) [Streptococcus cristatus AS 1.3089]
ATGCTTAGACCGTTAACGAGTAAGAGTTTGATTCTCTATAATCGGAATTTTCGAGAAGATGATAAGCTGGTCAAGATTTT
TACGGAACAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCGGGAAAATCCAAGCTGGCACCAGTCATCCAGCCTCTAA
CTACGGCAGAACTCTTGATGAAAATCAATGACGACGGACTCAGCTACATCGAAGATTACCAAGCTGTGGAAAGTTACGGG
CAAATCAAGAGCGATCTCTTTGTCATGGCTTATGCTAGCTATGTGGCAGCCTTAGCAGATGCCAGTATTCAGGACAATCA
GCCAGATCCAGCCCTCTTTGCCTTTCTGCAGAAGACACTAGATTTGATGAATCAAGGGCTGGATTATGAGGTTTTGACAA
ATATCTTTGAAATTCAGATTTTATCTCGCTTTGGCGTTTCTCTGAATTTCCATGACTGTGTTTTTTGTCATCGGACAGGT
CTGCCTTTTGACTTTTCCTTTCAATATGGCGGAGTGCTTTGTCCAGAGCATTATCACAAGGATGCTCATCGCAGTCATCT
CAATCCCAATATTCCTTTTTTGCTCAATCAGTTTCAGGCGGTTCAGTTTAGTGAGCTGGAGACAATTTCGCTCAAGCCTG
AAATCAAGCGACAGATCAGGGACTTTATAGATCAACTTTATGATGAATACGTAGGCATTCATCTCAAATCAAAGAAATTT
ATCGACTCTCTGGGCGACTGGGGCAGTATTTTACAAGACAAACATGAGGAAGAACAGCATGAAAAAAATAGCTATTGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(6-79)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

74.803

95.849

0.717