Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J8I95_RS06375 Genome accession   NZ_CP072687
Coordinates   1301480..1302217 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain YP3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1296480..1307217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8I95_RS06345 (J8I95_06265) yfiL 1296639..1297004 (-) 366 WP_000976008.1 DUF2799 domain-containing protein -
  J8I95_RS06350 (J8I95_06270) aroF 1297214..1298284 (+) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  J8I95_RS06355 (J8I95_06275) tyrA 1298295..1299416 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  J8I95_RS06360 (J8I95_06280) pheA 1299459..1300619 (-) 1161 WP_000200107.1 bifunctional chorismate mutase/prephenate dehydratase -
  J8I95_RS06365 (J8I95_06285) pheL 1300718..1300765 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  J8I95_RS06370 (J8I95_06290) raiA 1300869..1301210 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  J8I95_RS06375 (J8I95_06295) comL 1301480..1302217 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  J8I95_RS06380 (J8I95_06300) rluD 1302352..1303332 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J8I95_RS06385 (J8I95_06305) yfiH 1303329..1304060 (+) 732 WP_000040137.1 purine nucleoside phosphorylase YfiH -
  J8I95_RS06390 (J8I95_06310) clpC 1304190..1306763 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=484575 J8I95_RS06375 WP_000197686.1 1301480..1302217(-) (comL) [Escherichia coli strain YP3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=484575 J8I95_RS06375 WP_000197686.1 1301480..1302217(-) (comL) [Escherichia coli strain YP3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376