Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J8I94_RS06155 Genome accession   NZ_CP072686
Coordinates   1257124..1257861 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FP4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1252124..1262861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8I94_RS06125 (J8I94_06050) yfiL 1252283..1252648 (-) 366 WP_000976008.1 DUF2799 domain-containing protein -
  J8I94_RS06130 (J8I94_06055) aroF 1252858..1253928 (+) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  J8I94_RS06135 (J8I94_06060) tyrA 1253939..1255060 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  J8I94_RS06140 (J8I94_06065) pheA 1255103..1256263 (-) 1161 WP_000200107.1 bifunctional chorismate mutase/prephenate dehydratase -
  J8I94_RS06145 (J8I94_06070) pheL 1256362..1256409 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  J8I94_RS06150 (J8I94_06075) raiA 1256513..1256854 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  J8I94_RS06155 (J8I94_06080) comL 1257124..1257861 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  J8I94_RS06160 (J8I94_06085) rluD 1257996..1258976 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J8I94_RS06165 (J8I94_06090) yfiH 1258973..1259704 (+) 732 WP_000040137.1 purine nucleoside phosphorylase YfiH -
  J8I94_RS06170 (J8I94_06095) clpC 1259834..1262407 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=484486 J8I94_RS06155 WP_000197686.1 1257124..1257861(-) (comL) [Escherichia coli strain FP4]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=484486 J8I94_RS06155 WP_000197686.1 1257124..1257861(-) (comL) [Escherichia coli strain FP4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376