Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ID616_RS07535 Genome accession   NZ_CP061723
Coordinates   1657760..1658395 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas putida strain ZXPA-20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1652760..1663395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID616_RS07515 (ID616_07515) - 1652981..1653913 (+) 933 WP_016485471.1 ABC transporter ATP-binding protein -
  ID616_RS07520 (ID616_07520) - 1653910..1654689 (+) 780 WP_016485472.1 ABC transporter permease -
  ID616_RS07525 (ID616_07525) - 1654573..1655199 (-) 627 WP_156343168.1 DUF2062 domain-containing protein -
  ID616_RS07530 (ID616_07530) comA 1655342..1657555 (+) 2214 WP_191087404.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ID616_RS07535 (ID616_07535) exbB 1657760..1658395 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ID616_RS07540 (ID616_07540) - 1658392..1658826 (+) 435 WP_016485476.1 ExbD/TolR family protein -
  ID616_RS07545 (ID616_07545) lpxK 1658826..1659827 (+) 1002 WP_016485477.1 tetraacyldisaccharide 4'-kinase -
  ID616_RS07550 (ID616_07550) - 1659872..1660057 (+) 186 WP_003247142.1 Trm112 family protein -
  ID616_RS07555 (ID616_07555) kdsB 1660054..1660818 (+) 765 WP_023048425.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ID616_RS07560 (ID616_07560) - 1660818..1661282 (+) 465 WP_023048424.1 low molecular weight protein-tyrosine-phosphatase -
  ID616_RS07565 (ID616_07565) murB 1661279..1662298 (+) 1020 WP_016485479.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=484396 ID616_RS07535 WP_016391244.1 1657760..1658395(+) (exbB) [Pseudomonas putida strain ZXPA-20]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=484396 ID616_RS07535 WP_016391244.1 1657760..1658395(+) (exbB) [Pseudomonas putida strain ZXPA-20]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTCGGTCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCTTGCGCGCCGATTCGCCATTGGGCGAAATCCTTGCTGCTGGCCTGGCCAAC
TCGCGTCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATTCACGAACTGGAGCGCTACAT
CAGCACGCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAAATGACCGCCAATGCGGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTCATGGTCGGCATCCCGGCAGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829