Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ID616_RS07530 Genome accession   NZ_CP061723
Coordinates   1655342..1657555 (+) Length   737 a.a.
NCBI ID   WP_191087404.1    Uniprot ID   -
Organism   Pseudomonas putida strain ZXPA-20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1650342..1662555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID616_RS07510 (ID616_07510) - 1652222..1652845 (+) 624 WP_023049045.1 glutathione S-transferase -
  ID616_RS07515 (ID616_07515) - 1652981..1653913 (+) 933 WP_016485471.1 ABC transporter ATP-binding protein -
  ID616_RS07520 (ID616_07520) - 1653910..1654689 (+) 780 WP_016485472.1 ABC transporter permease -
  ID616_RS07525 (ID616_07525) - 1654573..1655199 (-) 627 WP_156343168.1 DUF2062 domain-containing protein -
  ID616_RS07530 (ID616_07530) comA 1655342..1657555 (+) 2214 WP_191087404.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ID616_RS07535 (ID616_07535) exbB 1657760..1658395 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ID616_RS07540 (ID616_07540) - 1658392..1658826 (+) 435 WP_016485476.1 ExbD/TolR family protein -
  ID616_RS07545 (ID616_07545) lpxK 1658826..1659827 (+) 1002 WP_016485477.1 tetraacyldisaccharide 4'-kinase -
  ID616_RS07550 (ID616_07550) - 1659872..1660057 (+) 186 WP_003247142.1 Trm112 family protein -
  ID616_RS07555 (ID616_07555) kdsB 1660054..1660818 (+) 765 WP_023048425.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ID616_RS07560 (ID616_07560) - 1660818..1661282 (+) 465 WP_023048424.1 low molecular weight protein-tyrosine-phosphatase -
  ID616_RS07565 (ID616_07565) murB 1661279..1662298 (+) 1020 WP_016485479.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79418.36 Da        Isoelectric Point: 10.0416

>NTDB_id=484395 ID616_RS07530 WP_191087404.1 1655342..1657555(+) (comA) [Pseudomonas putida strain ZXPA-20]
MRTGMFALALGLLCPGFFPALPSVGWLITLAACAAVSVFTRVWPLGCFVLGLCWACWSAQQALDDRLAAGLDGRTLWLEG
RVVGLPARTAQGVRFELEAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVSGGWRDALRQRLLVVQANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPCACALAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAMLPLLLALLAVLLVEPL
AALLPGFWLSFAAVATLIYCFSGRLGGWRPWQAWTRAEWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGALLLPLGGVGEALLWLAGGLLDGLFRLLALVAHQRPAWLAPALPLWAWLLVLLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPLGQVEVWQLDVGQGLAVLLRTRHYNLLYDAGPARGETDLGERVVLPTLSKLGVGSLDLMVISHAHADHAGGAA
AIQRGLPVRRLIGGEALDDVPLQPCASGEQWNWDGVRFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADTEMPRIDWLQAPHHGSRSSSTEAFIRASAPRGVLISRGRNNSFGHPHVQVMERYQRHGLAVHDTAVEGALRLVLGRHG
EVEGMRGQRRFWRVRAE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=484395 ID616_RS07530 WP_191087404.1 1655342..1657555(+) (comA) [Pseudomonas putida strain ZXPA-20]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGTCCGGGCTTTTTCCCCGCATTGCCATCGGTCGGATGGTT
GATAACGCTGGCTGCCTGCGCGGCCGTCAGCGTGTTTACCCGCGTTTGGCCATTGGGCTGTTTTGTGCTGGGGCTGTGTT
GGGCGTGCTGGTCTGCCCAGCAGGCCCTTGACGATCGCCTGGCTGCCGGCCTGGACGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCCTGCCAGCGCGAACTGCGCAGGGCGTGCGCTTCGAGCTGGAGGCGGCACGCTCGCGGCGGGCCGAACT
GCCGCAACGGCTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCACATGGGCCCGACCGGGAGGCGCAACTGCTGGCGCGGCGGGTGGGCGCCACCGGT
ACGGTAAAAGCCGGGCAGCTGCTGGCGCCGGTGAGCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGGTGGTCCA
AGCCAATGGCCGGCAGGCCGCATTGGTGGCACTGGTGCTGGGTGACGGCGCTGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGTACGGTGCACTTGCTGGTTATTTCTGGCCAGCACATCGGCCTCGTGGCCGGTCTGCTGTACGGCCTG
GTGGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCCCGGTTGCCGTGGCTGCCCTGTGCCTGTGCCCTGGCCATGGCGGC
GGCGTTGGCCTACGGCTGGCTGGCCGGTGCGGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCGGTAGTGCTGTTGT
GGCGCCTGCGTTTTCGCCACCTCGGCGCAATGCTGCCGCTATTGCTGGCGCTGCTCGCGGTGCTGCTGGTCGAACCCTTG
GCGGCGCTGCTGCCTGGGTTCTGGCTGTCGTTTGCCGCAGTGGCCACGCTCATCTACTGCTTCAGCGGCCGTTTGGGCGG
TTGGCGGCCCTGGCAGGCCTGGACGCGCGCGGAATGGGTGATCGCCATCGGCTTGCTGCCGGTGTTGCTGGCCACAGGTT
TACCGGTGAGTCTGAGTGCGCCGCTGGCCAATCTTGTCGCGGTGCCATGGGTTAGCCTGGCGGTGTTGCCGTTGGCGTTG
CTGGGGGCGTTGCTGCTGCCGCTGGGTGGGGTAGGGGAAGCGTTGCTGTGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGGCTGTTGGCGTTGGTGGCGCATCAGCGCCCGGCGTGGCTGGCCCCGGCCTTGCCGTTGTGGGCCTGGCTGCTGGTAT
TGCTGGGTGCGCTGCTGGTGCTGCTGCCTCGTGGCGTGCCTTTGCGCGGGTTGGGTGGGGTCATGTTGTTGGCGCTGTGG
GTGCCCAGGGAGCCGGTGCCGCTCGGCCAGGTCGAGGTCTGGCAGCTAGACGTTGGCCAAGGGCTGGCGGTGCTGTTGCG
TACCCGGCATTACAACCTGCTGTACGACGCCGGGCCGGCCAGAGGGGAGACCGACCTGGGCGAGCGGGTGGTGCTCCCGA
CCTTGAGCAAGCTGGGGGTGGGCAGCCTGGACTTGATGGTCATCAGCCATGCGCATGCCGACCATGCGGGCGGTGCTGCG
GCCATACAGCGTGGGCTGCCGGTCAGGCGGCTGATCGGTGGGGAAGCGCTGGATGATGTGCCGTTGCAGCCTTGTGCCAG
TGGCGAACAATGGAACTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCGGACGGGCAGAGTAGCAATGACCGTTCCT
GTGTCTTGCTGGTAGAGGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCGGCCGAACGGGCCTGGCTG
GCGGACACAGAAATGCCGCGTATCGACTGGTTGCAGGCACCGCATCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGGGCTAGTGCGCCGCGCGGGGTATTGATTTCGCGAGGGCGTAACAACAGCTTCGGGCACCCGCATGTGCAGGTGATGG
AGCGTTATCAGCGGCATGGTCTGGCGGTGCATGACACGGCGGTGGAGGGGGCGTTGCGGTTGGTGTTGGGGCGGCATGGG
GAGGTTGAGGGGATGAGGGGGCAGCGGCGGTTTTGGCGGGTTCGAGCTGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.059

98.1

0.579
  comA Ralstonia pseudosolanacearum GMI1000

33.924

100

0.364