Detailed information NTG0484390

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ID616_RS03605
• Genome accession: NZ_CP061723
• Coordinates: 779936..780802 (-)
• Length: 288 a.a.
• NCBI ID: WP_102667853.1
• Uniprot ID: -
• Organism: Pseudomonas putida strain ZXPA-20
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 774936..785802

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ID616_RS03570 (ID616_03570)	-	775308..776603 (-)	1296	WP_016484794.1	NAD(P)/FAD-dependent oxidoreductase	-
ID616_RS03575 (ID616_03575)	-	776688..776861 (-)	174	WP_013970765.1	DUF3094 family protein	-
ID616_RS03580 (ID616_03580)	-	776994..777623 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
ID616_RS03585 (ID616_03585)	-	777679..778110 (-)	432	WP_016484795.1	hypothetical protein	-
ID616_RS03590 (ID616_03590)	-	778197..778904 (+)	708	WP_060519469.1	energy-coupling factor ABC transporter permease	-
ID616_RS03595 (ID616_03595)	yacG	779116..779316 (-)	201	WP_016484797.1	DNA gyrase inhibitor YacG	-
ID616_RS03600 (ID616_03600)	coaE	779313..779936 (-)	624	WP_191087240.1	dephospho-CoA kinase	-
ID616_RS03605 (ID616_03605)	pilD	779936..780802 (-)	867	WP_102667853.1	prepilin peptidase	Machinery gene
ID616_RS03610 (ID616_03610)	-	780805..782013 (-)	1209	WP_191087241.1	type II secretion system F family protein	-
ID616_RS03615 (ID616_03615)	-	782230..782640 (+)	411	WP_191087242.1	pilin	-
ID616_RS03625 (ID616_03625)	-	783039..784193 (+)	1155	WP_023047451.1	Fic family protein	-
ID616_RS33030	-	785341..785505 (+)	165	Protein_700	integrase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31784.99 Da
• Isoelectric Point: 8.1476

>NTDB_id=484390 ID616_RS03605 WP_102667853.1 779936..780802(-) (pilD) [Pseudomonas putida strain ZXPA-20]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLGRQWQREAQEVLGLPLARHERFDLCLPASRCPHCAHQIRA
WENIPVLSYLALRGRCSACKARISPRYPLVEIASALLSLVVAWRFGASAEALLALPLTWCLLALSLIDADHQLLPDVLVL
PMLWLGLIVNAFGLYVPLADALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGVCLLRLRRHALGTAIPFGPYLAIAGWIAVLWGDEIYASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=484390 ID616_RS03605 WP_102667853.1 779936..780802(-) (pilD) [Pseudomonas putida strain ZXPA-20]
ATGACTCTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTCCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
CTTTCTCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGGGCGACAATGGCAGCGTGAGGCGCAAGAGGTATTGGGGC
TGCCGCTTGCGCGACACGAACGCTTCGACCTGTGCCTGCCGGCATCCCGCTGCCCGCATTGCGCGCATCAGATTCGCGCG
TGGGAGAACATTCCGGTACTCAGCTACCTGGCCTTGCGCGGGCGTTGCTCAGCCTGCAAGGCCCGTATCAGCCCGCGCTA
CCCGCTGGTCGAGATAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGGCCGAGGCGTTGCTGG
CACTGCCGCTCACTTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCGGACCACCAATTGCTGCCGGATGTGCTGGTGCTG
CCGATGCTGTGGCTTGGGCTGATCGTGAACGCCTTCGGCCTGTATGTGCCACTGGCTGACGCGTTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTAATGGCGCTGATCGGGGCCTGGGGCGGCTGGCAGGTGCTGCCGTTGACGCTGCTGCTGTCGTCGGTGGTGGGGGCG
CTGGTAGGCGTGTGCCTGCTGCGTTTGCGCCGGCATGCGCTGGGTACGGCGATCCCCTTTGGCCCTTATCTGGCGATTGC
GGGGTGGATTGCTGTGCTCTGGGGTGATGAAATATACGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.623	95.833	0.514
pilD	Acinetobacter baumannii D1279779	50.178	97.569	0.49
pilD	Acinetobacter nosocomialis M2	49.466	97.569	0.483
pilD	Vibrio campbellii strain DS40M4	49.281	96.528	0.476
pilD	Neisseria gonorrhoeae MS11	49.442	93.403	0.462