Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   J8G07_RS10120 Genome accession   NZ_CP072612
Coordinates   1979435..1981207 (+) Length   590 a.a.
NCBI ID   WP_032873770.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain G10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1974435..1986207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G07_RS10095 - 1974547..1975326 (+) 780 WP_032873761.1 enoyl-CoA hydratase -
  J8G07_RS10100 - 1975340..1976113 (+) 774 WP_032873763.1 electron transfer flavoprotein subunit beta/FixA family protein -
  J8G07_RS10105 - 1976145..1977122 (+) 978 WP_032873765.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  J8G07_RS10110 - 1977335..1978825 (+) 1491 WP_032873767.1 alpha-N-arabinofuranosidase -
  J8G07_RS10115 trxA 1978979..1979293 (+) 315 WP_003152560.1 thioredoxin -
  J8G07_RS10120 uvrC 1979435..1981207 (+) 1773 WP_032873770.1 excinuclease ABC subunit UvrC Machinery gene
  J8G07_RS10125 - 1981574..1982803 (+) 1230 WP_032873773.1 aspartate kinase -
  J8G07_RS10130 - 1982850..1983296 (-) 447 WP_007612940.1 YslB family protein -
  J8G07_RS10135 sdhC 1983593..1984201 (+) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  J8G07_RS10140 sdhA 1984235..1985995 (+) 1761 WP_003152573.1 succinate dehydrogenase flavoprotein subunit -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68341.32 Da        Isoelectric Point: 9.7120

>NTDB_id=484371 J8G07_RS10120 WP_032873770.1 1979435..1981207(+) (uvrC) [Bacillus amyloliquefaciens strain G10]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNREIVEDITRFLKGGHNEIKKELKAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDRDMISEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSVFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=484371 J8G07_RS10120 WP_032873770.1 1979435..1981207(+) (uvrC) [Bacillus amyloliquefaciens strain G10]
ATGAATAAACAACTGAAAGAAAAGCTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAAGTCTTGAAAAACAGGGTGCGGTCTTATTTCACCGGTTCTCATGACGCAAAAACCC
AACGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGCCATCCGCGGCTGATTGTCACTCGGAATGTCAAAAAAGACAAAGGACGCTATTTCGGCCCGTATCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTTTACCCGCTCAGGAAATGCTCAAAGCTTCCGGACCGCGTCTGTCTC
TATTATCATCTCGGACAATGCCTCGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGCGAGATTGTTGAAGACAT
CACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAAGAGCTCAAAGCGAAAATGGCAGAGGCGGCGGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGACCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAAAAAATGACCATGAAT
GACCTTCTGGACCGCGATGTGTTTGCATATGCCTACGATAAAGGCTGGATGTGCGTCCAAGTCTTTTTCATTCGCCAAGG
AAAACTGATCGAACGCGATGTCAGCATGTTTCCGATGTATCAGGAAGCGGACGAAGAGTTTCTGACCTTCATCGGCCAGT
TCTATTCCAAAAACAATCACTTTCTGCCTAAGGAAATTCTGGTGCCTGACAGCGTTGACAGGGACATGATCAGCGAGCTG
TTGGAAACCGCCGTGCATCAGCCGAAAAAAGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
TCTGCGGGAAAAATTCTCGTTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCAGCCGAACGGCTCGGCGAAGCGCTGA
ATATTTACACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCCGTATCGGCCATGATTGTC
TTTATTGACGGAAAACCGAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCGGATGATTACGGTTC
AATGAGGGAAGTCGTCAGAAGAAGGTACACGAGGGTGCTCCGCGAAAACCTTCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGGCAGATTAACGCGGCGCGCGACGTGCTCGAGAATGAGCTCGGCCTTGATGTCCCGGTAGCGGGATTGGCG
AAAGATGATAAACACCGAACATCCAACCTTTTGATCGGCGACCCGCTTGAACCGGTGTTTTTGGAGCGGAACAGCCAAGA
GTTTTACCTGCTTCAGCGTATTCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGACAGATCCGAGGAAAAAGCG
TCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAAAAACGCAAAAAAATGCTCTTAAAACATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATCAAAAAAGCGGGTGTGCCGGCCGCGGCGGCCCAGCTGCTGTTTGAAAA
ATTAAAAAAATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrB/uvrC motif (UVR)

(198-229)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.864

99.661

0.597
  uvrC Streptococcus pneumoniae R6

59.524

99.661

0.593
  uvrC Streptococcus pneumoniae D39

59.524

99.661

0.593