Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ID168_RS16505 Genome accession   NZ_CP061704
Coordinates   3362140..3362829 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain Y4_39     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3357140..3367829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID168_RS16470 (ID168_16470) - 3357338..3357820 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ID168_RS16475 (ID168_16475) flgM 3357835..3358101 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ID168_RS16480 (ID168_16480) - 3358171..3358590 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  ID168_RS16485 (ID168_16485) comFC 3358664..3359353 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  ID168_RS16490 (ID168_16490) - 3359359..3359643 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  ID168_RS16495 (ID168_16495) comFA 3359701..3361086 (-) 1386 WP_094247454.1 DEAD/DEAH box helicase Machinery gene
  ID168_RS16500 (ID168_16500) - 3361194..3362042 (-) 849 WP_003151387.1 DegV family protein -
  ID168_RS16505 (ID168_16505) degU 3362140..3362829 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ID168_RS16510 (ID168_16510) degS 3362906..3364069 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ID168_RS16515 (ID168_16515) - 3364292..3364939 (+) 648 WP_060657503.1 YigZ family protein -
  ID168_RS16520 (ID168_16520) - 3364944..3366119 (+) 1176 WP_071392366.1 LCP family protein -
  ID168_RS16525 (ID168_16525) - 3366209..3367285 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=484323 ID168_RS16505 WP_003219701.1 3362140..3362829(-) (degU) [Bacillus velezensis strain Y4_39]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=484323 ID168_RS16505 WP_003219701.1 3362140..3362829(-) (degU) [Bacillus velezensis strain Y4_39]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1