Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AVCA6_RS01385 Genome accession   NC_021150
Coordinates   277220..277894 (+) Length   224 a.a.
NCBI ID   WP_012698982.1    Uniprot ID   C1DI57
Organism   Azotobacter vinelandii CA6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 272220..282894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVCA6_RS26405 - 272385..272711 (+) 327 Protein_274 DUF3360 family protein -
  AVCA6_RS01365 (AvCA6_02900) argB 272800..273702 (-) 903 WP_012698978.1 acetylglutamate kinase -
  AVCA6_RS01370 (AvCA6_02910) - 273820..275352 (-) 1533 Protein_276 phosphomannomutase/phosphoglucomutase -
  AVCA6_RS01375 (AvCA6_02920) dut 275395..275850 (-) 456 WP_012698980.1 dUTP diphosphatase -
  AVCA6_RS01380 (AvCA6_02930) coaBC 275855..277063 (-) 1209 WP_012698981.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AVCA6_RS01385 (AvCA6_02940) radC 277220..277894 (+) 675 WP_012698982.1 RadC family protein Machinery gene
  AVCA6_RS01390 (AvCA6_02950) mtgA 277907..278620 (-) 714 WP_175555865.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  AVCA6_RS01395 (AvCA6_02960) - 278690..279067 (+) 378 WP_012698984.1 DUF423 domain-containing protein -
  AVCA6_RS01400 (AvCA6_02970) thiS 279154..279354 (+) 201 WP_012698985.1 sulfur carrier protein ThiS -
  AVCA6_RS01405 (AvCA6_02980) - 279445..280239 (+) 795 WP_012698986.1 thiazole synthase -
  AVCA6_RS01410 (AvCA6_02990) trmB 280329..281051 (+) 723 WP_012698987.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AVCA6_RS01415 (AvCA6_03000) hemW 281236..282432 (-) 1197 WP_236616332.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24785.52 Da        Isoelectric Point: 8.1770

>NTDB_id=48401 AVCA6_RS01385 WP_012698982.1 277220..277894(+) (radC) [Azotobacter vinelandii CA6]
MGIRDWPAAERPREKLLEQGASALSDAELLAIFLRTGVAGQTAVDLARHLLNDFGGLRALLEADRAAFSRRLGLGPAKFA
QLQAVLEMSRRHLAERLRRDPALESPQAVRDYLKARLRHEPHEVFGCLFLDAKHRVLAFEVLFQGTVDGASVYPRQVLKR
ALAHNAAALILTHNHPSGIAEPSQADFSLTRRLKEALALVDVRVLDHFIVGDGEPLSMAEQGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=48401 AVCA6_RS01385 WP_012698982.1 277220..277894(+) (radC) [Azotobacter vinelandii CA6]
ATGGGCATTCGGGACTGGCCGGCGGCGGAGCGGCCGCGGGAAAAACTGCTGGAGCAGGGGGCGTCGGCGCTGAGCGATGC
CGAGCTTTTGGCGATCTTCCTGCGCACCGGGGTCGCCGGGCAGACCGCGGTGGATCTGGCCCGCCACCTGCTGAACGATT
TCGGCGGCCTGCGTGCCCTGCTCGAGGCCGATCGGGCCGCGTTCAGCCGCCGCCTCGGCCTCGGTCCGGCCAAGTTCGCC
CAGTTGCAGGCGGTGCTGGAAATGTCCCGCCGGCACCTGGCCGAGCGCCTGCGCCGCGATCCGGCGCTGGAGAGCCCGCA
GGCGGTGCGCGATTACCTGAAGGCGCGCCTGCGCCACGAGCCCCACGAGGTCTTCGGCTGCCTGTTCCTCGACGCCAAGC
ATCGGGTGCTGGCTTTCGAGGTGCTGTTCCAGGGCACCGTCGACGGCGCCAGCGTCTATCCGCGCCAAGTGCTCAAGCGC
GCCCTGGCGCACAACGCCGCCGCGCTGATCCTCACCCACAACCATCCTTCCGGCATCGCCGAGCCGAGCCAGGCGGACTT
CAGCCTGACCCGGCGGCTGAAGGAGGCGCTGGCGCTGGTCGATGTGCGGGTACTCGATCATTTCATCGTCGGCGACGGCG
AGCCGCTGTCGATGGCCGAGCAGGGCTGGCTGTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-79)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DI57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

50.704

95.089

0.482
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.375

Multiple sequence alignment