Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IC769_RS10155 Genome accession   NZ_CP061672
Coordinates   2169739..2170119 (-) Length   126 a.a.
NCBI ID   WP_191108256.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS23     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2164739..2175119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC769_RS10125 (IC769_10125) tadA 2164745..2165246 (-) 502 Protein_1995 tRNA adenosine(34) deaminase TadA -
  IC769_RS10130 (IC769_10130) - 2165254..2166378 (-) 1125 WP_019458997.1 enoyl-CoA hydratase/isomerase family protein -
  IC769_RS10135 (IC769_10135) ung 2166375..2167088 (-) 714 WP_191108253.1 uracil-DNA glycosylase -
  IC769_RS10140 (IC769_10140) - 2167139..2167735 (-) 597 WP_039251397.1 6-carboxytetrahydropterin synthase -
  IC769_RS10145 (IC769_10145) gspK 2167965..2168924 (-) 960 WP_191108254.1 type II secretion system minor pseudopilin GspK -
  IC769_RS10150 (IC769_10150) xcpW 2168924..2169739 (-) 816 WP_191108255.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IC769_RS10155 (IC769_10155) xcpV 2169739..2170119 (-) 381 WP_191108256.1 type II secretion system minor pseudopilin GspI Machinery gene
  IC769_RS10160 (IC769_10160) - 2170109..2170660 (-) 552 WP_004701984.1 type II secretion system protein -
  IC769_RS10165 (IC769_10165) - 2170670..2171278 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  IC769_RS10170 (IC769_10170) - 2171316..2172089 (-) 774 WP_191108257.1 TatD family hydrolase -
  IC769_RS10175 (IC769_10175) - 2172107..2172448 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  IC769_RS10180 (IC769_10180) - 2172461..2173441 (-) 981 WP_191108258.1 DNA polymerase III subunit delta' -
  IC769_RS10185 (IC769_10185) kdsB 2173453..2174214 (-) 762 WP_191108259.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14004.24 Da        Isoelectric Point: 9.4463

>NTDB_id=484008 IC769_RS10155 WP_191108256.1 2169739..2170119(-) (xcpV) [Acinetobacter seifertii strain AS23]
MKSKGFTLLEVMIALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQV
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=484008 IC769_RS10155 WP_191108256.1 2169739..2170119(-) (xcpV) [Acinetobacter seifertii strain AS23]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGATTGCTTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTAGCAATGCAGTACACACAGTCTACTTCTAATGCAATTTTACGAACCAAAGCTCAATTTGTAGCAATGAATGAAATTG
CTATGATGGAGATTAACCAAGAGTGGTTGCAAGGCACTCAAAGTAAGCAGGTAACTTCTCAAGGTGAGACATGGCAGGTT
GATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATCAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACGCATATGGTCTTTTTTAATTATCCAGTGAAAGTAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937