Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IC769_RS02170 Genome accession   NZ_CP061672
Coordinates   459343..459978 (-) Length   211 a.a.
NCBI ID   WP_191108982.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 454343..464978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC769_RS02135 (IC769_02135) mlaE 454672..455448 (+) 777 WP_004705340.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  IC769_RS02140 (IC769_02140) - 455448..456131 (+) 684 WP_004705341.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IC769_RS02145 (IC769_02145) - 456158..456799 (+) 642 WP_004705342.1 phospholipid-binding protein MlaC -
  IC769_RS02150 (IC769_02150) - 456811..457098 (+) 288 WP_004705343.1 lipid asymmetry maintenance protein MlaB -
  IC769_RS02155 (IC769_02155) - 457173..458186 (-) 1014 WP_004705344.1 magnesium and cobalt transport protein CorA -
  IC769_RS02160 (IC769_02160) - 458344..458925 (+) 582 WP_004705346.1 TIGR00730 family Rossman fold protein -
  IC769_RS02165 (IC769_02165) - 458940..459337 (+) 398 Protein_423 NUDIX domain-containing protein -
  IC769_RS02170 (IC769_02170) comF 459343..459978 (-) 636 WP_191108982.1 ComF family protein Machinery gene
  IC769_RS02175 (IC769_02175) recG 459971..462016 (-) 2046 WP_077168973.1 ATP-dependent DNA helicase RecG -
  IC769_RS02180 (IC769_02180) - 462037..462864 (+) 828 WP_004705354.1 NAD-dependent epimerase/dehydratase family protein -
  IC769_RS02185 (IC769_02185) - 462932..463918 (+) 987 WP_025469243.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24494.79 Da        Isoelectric Point: 9.9679

>NTDB_id=484000 IC769_RS02170 WP_191108982.1 459343..459978(-) (comF) [Acinetobacter seifertii strain AS23]
MFKLFNPQYPFQLLSPCLLCEIGTRGKHSLCKECWEQLPWLKQAVQRNDLSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEILQQLKFPKVQAIIPMPISKERLTERGFNQSLLLAKLLSKQLRIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAI
PQEKRRYRRVLIIDDVITTGSSISALSLVLKQLGCTSIYANCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=484000 IC769_RS02170 WP_191108982.1 459343..459978(-) (comF) [Acinetobacter seifertii strain AS23]
ATGTTTAAGTTGTTCAATCCTCAATATCCTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGGTAA
GCACTCGCTTTGTAAAGAATGTTGGGAACAACTACCATGGCTTAAGCAGGCAGTTCAGCGTAATGATCTATCTGTTCTTG
TGGCCTGTCATTATGCCTATCCAATTAACCGCATAATTCAGCAGTTTAAATATGAACAGAAATTACATTACCAAACCCTA
CTTGCTGAAATTTTACAGCAATTAAAATTTCCTAAGGTACAAGCCATAATACCGATGCCCATTTCTAAAGAGCGTCTAAC
GGAGCGAGGTTTTAATCAATCATTATTACTTGCCAAGCTTCTAAGTAAACAATTAAGAATACCCGTTTGGCAGCCTGTCC
AACGCCTCAATGAGCGTTCACAAAAAGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGATA
CCTCAAGAAAAACGGCGCTACCGTCGTGTGCTGATTATTGATGATGTGATCACAACAGGAAGTTCAATTTCCGCTTTAAG
TCTAGTGCTAAAACAGCTAGGGTGCACATCTATTTATGCAAACTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

90.047

100

0.9
  comF Acinetobacter baumannii D1279779

89.1

100

0.891