Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   IC769_RS01805 Genome accession   NZ_CP061672
Coordinates   383641..384117 (+) Length   158 a.a.
NCBI ID   WP_004705236.1    Uniprot ID   N8R2P4
Organism   Acinetobacter seifertii strain AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378641..389117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC769_RS01795 (IC769_01795) - 379149..379931 (+) 783 WP_004705234.1 pilus assembly PilX N-terminal domain-containing protein -
  IC769_RS01800 (IC769_01800) - 379947..383627 (+) 3681 WP_191108967.1 PilC/PilY family type IV pilus protein -
  IC769_RS01805 (IC769_01805) comE 383641..384117 (+) 477 WP_004705236.1 type IV pilin protein Machinery gene
  IC769_RS01810 (IC769_01810) - 384111..384575 (+) 465 WP_004705238.1 type IV pilin protein -
  IC769_RS01815 (IC769_01815) rpsP 384723..384974 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  IC769_RS01820 (IC769_01820) rimM 384994..385542 (+) 549 WP_004705239.1 ribosome maturation factor RimM -
  IC769_RS01825 (IC769_01825) trmD 385588..386343 (+) 756 WP_004705241.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IC769_RS01830 (IC769_01830) rplS 386563..386931 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  IC769_RS01835 (IC769_01835) - 386985..387925 (-) 941 Protein_356 lipase family alpha/beta hydrolase -
  IC769_RS01840 (IC769_01840) - 388046..389080 (-) 1035 WP_004705246.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17226.72 Da        Isoelectric Point: 9.9755

>NTDB_id=483999 IC769_RS01805 WP_004705236.1 383641..384117(+) (comE) [Acinetobacter seifertii strain AS23]
MKRNFTYSLGFTLIELMIVVVIVAIFAAVAIPSYQAYVLRADASRAQQQMQQIAVQLARQKSRNFNYKGFSMGATSSVNL
PVGATGSAIKYKITVRDGDDTTKPLTDPAALGQNWVIRAEASDPNNFTYLFGSNGLRCKNKATSNVTYITCGTGAEPW

Nucleotide


Download         Length: 477 bp        

>NTDB_id=483999 IC769_RS01805 WP_004705236.1 383641..384117(+) (comE) [Acinetobacter seifertii strain AS23]
ATGAAACGTAATTTCACGTATTCTTTAGGCTTTACTCTTATTGAGCTAATGATTGTAGTTGTGATTGTTGCTATTTTTGC
CGCAGTTGCAATACCTTCATACCAAGCCTATGTTCTACGAGCGGATGCTTCACGTGCGCAGCAGCAAATGCAACAGATCG
CAGTCCAACTTGCACGTCAGAAATCTAGAAATTTTAATTACAAAGGCTTTTCTATGGGCGCTACATCATCTGTAAATTTG
CCTGTTGGAGCAACTGGTAGTGCTATAAAATATAAAATAACGGTACGCGATGGTGACGATACAACGAAACCTTTAACAGA
TCCTGCAGCTTTAGGGCAAAACTGGGTGATTCGAGCAGAGGCTTCCGATCCTAATAATTTTACTTATTTGTTTGGTAGTA
ACGGATTACGTTGTAAAAATAAAGCCACTAGCAATGTTACTTATATAACTTGTGGCACTGGAGCTGAGCCGTGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8R2P4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

46.061

100

0.481
  pilY2 Acinetobacter baumannii D1279779

45

100

0.456