Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   J7D37_RS16105 Genome accession   NZ_CP072526
Coordinates   3374919..3375395 (-) Length   158 a.a.
NCBI ID   WP_031380019.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3369919..3380395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS16070 (J7D37_16070) - 3369988..3371022 (+) 1035 WP_038347695.1 lipase secretion chaperone -
  J7D37_RS16075 (J7D37_16075) - 3371137..3372078 (+) 942 WP_085941363.1 lipase family alpha/beta hydrolase -
  J7D37_RS16080 (J7D37_16080) rplS 3372131..3372499 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  J7D37_RS16085 (J7D37_16085) trmD 3372707..3373447 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  J7D37_RS16090 (J7D37_16090) rimM 3373493..3374041 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  J7D37_RS16095 (J7D37_16095) rpsP 3374062..3374313 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  J7D37_RS16100 (J7D37_16100) pilE 3374461..3374925 (-) 465 WP_004745412.1 type IV pilin protein Machinery gene
  J7D37_RS16105 (J7D37_16105) pilY2 3374919..3375395 (-) 477 WP_031380019.1 type IV pilin protein Machinery gene
  J7D37_RS16110 (J7D37_16110) - 3375409..3379098 (-) 3690 WP_038347694.1 PilC/PilY family type IV pilus protein -
  J7D37_RS16115 (J7D37_16115) - 3379114..3379896 (-) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17393.89 Da        Isoelectric Point: 9.7307

>NTDB_id=483965 J7D37_RS16105 WP_031380019.1 3374919..3375395(-) (pilY2) [Acinetobacter baumannii strain DETAB-E227]
MKRKFTYSLGFTLIEVMVVVVIVAIFAAVAIPSYQAYVLRADASRAEQEIQKISIQLNRHKSRNFNYKGFSTGAAAPVIL
PVGATGDAVKYQITIRDGDDTSKPLTDPTALGQNWVIRAEASDPYNFTYLFSSNGLRCKNKATSNVTYITCGTGAERW

Nucleotide


Download         Length: 477 bp        

>NTDB_id=483965 J7D37_RS16105 WP_031380019.1 3374919..3375395(-) (pilY2) [Acinetobacter baumannii strain DETAB-E227]
ATGAAACGTAAATTCACATATTCTTTGGGCTTCACTCTTATTGAGGTAATGGTTGTGGTGGTGATTGTTGCTATTTTTGC
GGCAGTTGCAATACCTTCATATCAAGCCTATGTTTTGCGTGCGGATGCTTCGCGCGCAGAACAGGAAATCCAGAAAATTT
CCATACAGCTCAATCGTCATAAATCTAGAAATTTTAATTATAAAGGTTTTTCTACAGGTGCTGCTGCGCCAGTAATTTTG
CCTGTTGGAGCGACTGGTGATGCTGTTAAATATCAAATAACAATCCGAGATGGTGATGATACTTCGAAACCTTTAACAGA
TCCTACAGCTTTAGGGCAAAACTGGGTAATTCGAGCAGAGGCTTCCGATCCTTATAATTTTACTTATTTATTTAGTAGTA
ATGGATTACGTTGTAAAAATAAAGCCACTAGCAATGTTACTTATATAACTTGTGGCACTGGAGCTGAGCGGTGGTAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

46.25

100

0.468
  comE Acinetobacter baylyi ADP1

42.424

100

0.443