Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IC772_RS10025 Genome accession   NZ_CP061664
Coordinates   2155570..2155950 (-) Length   126 a.a.
NCBI ID   WP_019458993.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS28     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2150570..2160950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS09995 (IC772_09990) tadA 2150575..2151077 (-) 503 Protein_1966 tRNA adenosine(34) deaminase TadA -
  IC772_RS10000 (IC772_09995) - 2151085..2152209 (-) 1125 WP_019458997.1 enoyl-CoA hydratase/isomerase family protein -
  IC772_RS10005 (IC772_10000) ung 2152206..2152919 (-) 714 WP_191014854.1 uracil-DNA glycosylase -
  IC772_RS10010 (IC772_10005) - 2152970..2153566 (-) 597 WP_039251397.1 6-pyruvoyl trahydropterin synthase family protein -
  IC772_RS10015 (IC772_10010) gspK 2153796..2154755 (-) 960 WP_174739125.1 type II secretion system minor pseudopilin GspK -
  IC772_RS10020 (IC772_10015) xcpW 2154755..2155570 (-) 816 WP_191014856.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IC772_RS10025 (IC772_10020) xcpV 2155570..2155950 (-) 381 WP_019458993.1 type II secretion system minor pseudopilin GspI Machinery gene
  IC772_RS10030 (IC772_10025) - 2155940..2156491 (-) 552 WP_004701984.1 type II secretion system protein -
  IC772_RS10035 (IC772_10030) - 2156501..2157109 (-) 609 WP_058061711.1 TetR/AcrR family transcriptional regulator -
  IC772_RS10040 (IC772_10035) - 2157147..2157920 (-) 774 WP_077168509.1 TatD family hydrolase -
  IC772_RS10045 (IC772_10040) - 2157938..2158279 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  IC772_RS10050 (IC772_10045) - 2158292..2159272 (-) 981 WP_191014857.1 DNA polymerase III subunit delta' -
  IC772_RS10055 (IC772_10050) kdsB 2159284..2160045 (-) 762 WP_191014859.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.19 Da        Isoelectric Point: 9.4463

>NTDB_id=483929 IC772_RS10025 WP_019458993.1 2155570..2155950(-) (xcpV) [Acinetobacter seifertii strain AS28]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=483929 IC772_RS10025 WP_019458993.1 2155570..2155950(-) (xcpV) [Acinetobacter seifertii strain AS28]
ATGAAATCTAAAGGCTTTACCCTATTAGAGGTTATGGTAGCTCTTGCAATCTTTGCAGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACACAGTCTACTTCTAATGCGATTTTACGAACTAAAGCTCAATTTGTAGCAATGAATGAAATTG
CTATGATGGAGATTAACCAAGAGTGGTTGCAGGGTACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATCAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

96.032

100

0.96