Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IC772_RS02225 Genome accession   NZ_CP061664
Coordinates   463772..464407 (-) Length   211 a.a.
NCBI ID   WP_191016466.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458772..469407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS02190 (IC772_02190) mlaE 459100..459876 (+) 777 WP_004705340.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  IC772_RS02195 (IC772_02195) - 459876..460559 (+) 684 WP_019457797.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IC772_RS02200 (IC772_02200) - 460586..461227 (+) 642 WP_039253560.1 phospholipid-binding protein MlaC -
  IC772_RS02205 (IC772_02205) - 461239..461526 (+) 288 WP_019457795.1 lipid asymmetry maintenance protein MlaB -
  IC772_RS02210 (IC772_02210) - 461601..462614 (-) 1014 WP_004705344.1 magnesium and cobalt transport protein CorA -
  IC772_RS02215 (IC772_02215) - 462772..463353 (+) 582 WP_004705346.1 TIGR00730 family Rossman fold protein -
  IC772_RS02220 (IC772_02220) - 463368..463766 (+) 399 WP_068932463.1 NUDIX hydrolase -
  IC772_RS02225 (IC772_02225) comF 463772..464407 (-) 636 WP_191016466.1 ComF family protein Machinery gene
  IC772_RS02230 (IC772_02230) recG 464400..466445 (-) 2046 WP_191016468.1 ATP-dependent DNA helicase RecG -
  IC772_RS02235 (IC772_02235) - 466466..467293 (+) 828 WP_077165171.1 NAD-dependent epimerase/dehydratase family protein -
  IC772_RS02240 (IC772_02240) - 467361..468347 (+) 987 WP_191017653.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24489.76 Da        Isoelectric Point: 9.9679

>NTDB_id=483920 IC772_RS02225 WP_191016466.1 463772..464407(-) (comF) [Acinetobacter seifertii strain AS28]
MFKLFNPQYLFQLLSPCLLCEIGTRGKHSLCKECWEQLPWLKQSVQRNDLSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEILQQIKFPKVQAIVPMPISKERLTERGFNQSLLLAKLLSKQLRIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAI
TQEKRRYRRVLIIDDVITTGSSISALSLVLKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=483920 IC772_RS02225 WP_191016466.1 463772..464407(-) (comF) [Acinetobacter seifertii strain AS28]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGGTAA
GCACTCGCTTTGTAAAGAATGTTGGGAACAACTACCATGGCTTAAGCAGTCAGTTCAGCGTAATGATCTATCTGTTCTTG
TGGCCTGTCATTATGCCTATCCAATTAACCGCATAATTCAGCAGTTTAAATATGAACAGAAATTACATTACCAAACCCTA
CTTGCTGAAATTTTACAGCAAATAAAATTTCCTAAAGTACAAGCCATAGTACCTATGCCTATTTCTAAGGAGCGTTTAAC
TGAACGAGGTTTTAATCAATCCTTATTACTTGCCAAGCTTCTAAGTAAACAATTAAGAATACCCGTTTGGCAGCCTGTCC
AACGCCTCAATGAGCGTTCACAAAAAGGATTATCTCGACTCGAAAGGTTTGAAAATATTGAACAGCAATTTGTTGCGATA
ACTCAAGAAAAACGGCGCTACCGTCGTGTGCTGATTATTGATGATGTGATCACAACAGGAAGTTCAATTTCCGCTTTAAG
TCTGGTGCTAAAACAGCTAGGGTGCACCTCTATTTATGCAAGCTGCCTAGCTGCTGCATCATCTACATCATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

91.469

100

0.915
  comF Acinetobacter baumannii D1279779

90.521

100

0.905