Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IC772_RS01855 Genome accession   NZ_CP061664
Coordinates   390067..390489 (+) Length   140 a.a.
NCBI ID   WP_191016413.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385067..395489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS01840 (IC772_01840) - 385193..385882 (+) 690 WP_191016410.1 pilus assembly protein PilX -
  IC772_RS01845 (IC772_01845) - 385959..389492 (+) 3534 WP_223852359.1 PilC/PilY family type IV pilus protein -
  IC772_RS01850 (IC772_01850) - 389504..390067 (+) 564 WP_191016411.1 type IV pilin protein -
  IC772_RS01855 (IC772_01855) comF 390067..390489 (+) 423 WP_191016413.1 type IV pilin protein Machinery gene
  IC772_RS01860 (IC772_01860) rpsP 390637..390888 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  IC772_RS01865 (IC772_01865) rimM 390908..391456 (+) 549 WP_191016414.1 ribosome maturation factor RimM -
  IC772_RS01870 (IC772_01870) trmD 391502..392257 (+) 756 WP_077163627.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IC772_RS01875 (IC772_01875) rplS 392477..392845 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  IC772_RS01880 (IC772_01880) - 392899..393840 (-) 942 WP_077164869.1 lipase family alpha/beta hydrolase -
  IC772_RS01885 (IC772_01885) - 393961..394995 (-) 1035 WP_191016415.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15518.58 Da        Isoelectric Point: 9.2539

>NTDB_id=483919 IC772_RS01855 WP_191016413.1 390067..390489(+) (comF) [Acinetobacter seifertii strain AS28]
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYRIRTNRADVQSEMMQTAQRLQSYYVINHNYTSATLNNGLTTKDYPAS
NPIYTIALVTNSQTWTLTATPKTSTIQAGNGTVLLNSDGQKCWTKGQSCTTSTTSNWDGK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=483919 IC772_RS01855 WP_191016413.1 390067..390489(+) (comF) [Acinetobacter seifertii strain AS28]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAGCTAATGATTGTGGTTGCTATTATTGCAATTTTGGCAGCAATTGCTTA
CCCCTCCTATACACAGTATAGAATTCGGACGAATCGTGCGGATGTGCAAAGTGAAATGATGCAAACAGCGCAACGTCTAC
AAAGTTACTATGTGATTAATCATAATTATACTAGTGCTACACTCAATAATGGTTTAACTACTAAAGATTATCCAGCATCC
AATCCAATTTATACTATTGCACTAGTCACAAACTCTCAAACATGGACGCTTACTGCAACTCCTAAAACAAGTACGATTCA
AGCTGGAAATGGGACTGTACTTTTGAATAGTGACGGGCAGAAATGTTGGACTAAAGGTCAGTCTTGTACAACTTCAACCA
CTTCCAATTGGGATGGCAAATAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

54.167

100

0.557
  pilE Acinetobacter baumannii D1279779

52.206

97.143

0.507
  pilA2 Legionella pneumophila strain ERS1305867

39.416

97.857

0.386
  pilA2 Legionella pneumophila str. Paris

39.416

97.857

0.386