Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IC776_RS16200 Genome accession   NZ_CP061646
Coordinates   3490966..3491601 (+) Length   211 a.a.
NCBI ID   WP_191012202.1    Uniprot ID   A0A7H2P6L9
Organism   Acinetobacter seifertii strain AS39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3485966..3496601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC776_RS16185 (IC776_16185) - 3487026..3488012 (-) 987 WP_191013296.1 putative solute-binding protein -
  IC776_RS16190 (IC776_16190) - 3488080..3488907 (-) 828 WP_019457791.1 NAD-dependent epimerase/dehydratase family protein -
  IC776_RS16195 (IC776_16195) recG 3488928..3490973 (+) 2046 WP_191012201.1 ATP-dependent DNA helicase RecG -
  IC776_RS16200 (IC776_16200) comF 3490966..3491601 (+) 636 WP_191012202.1 ComF family protein Machinery gene
  IC776_RS16205 (IC776_16205) - 3491607..3492005 (-) 399 WP_100193358.1 NUDIX hydrolase -
  IC776_RS16210 (IC776_16210) - 3492020..3492601 (-) 582 WP_191012203.1 TIGR00730 family Rossman fold protein -
  IC776_RS16215 (IC776_16215) - 3492759..3493772 (+) 1014 WP_004705344.1 magnesium and cobalt transport protein CorA -
  IC776_RS16220 (IC776_16220) - 3493847..3494134 (-) 288 WP_086496846.1 lipid asymmetry maintenance protein MlaB -
  IC776_RS16225 (IC776_16225) - 3494146..3494787 (-) 642 WP_019457796.1 phospholipid-binding protein MlaC -
  IC776_RS16230 (IC776_16230) - 3494814..3495497 (-) 684 WP_191012204.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IC776_RS16235 (IC776_16235) mlaE 3495497..3496273 (-) 777 WP_004705340.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24517.84 Da        Isoelectric Point: 9.9577

>NTDB_id=483822 IC776_RS16200 WP_191012202.1 3490966..3491601(+) (comF) [Acinetobacter seifertii strain AS39]
MFKLFNPQYLFQLLSPCLLCEIGTRGKHSLCKECWEQLPWLKQTVQRNDQCVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQIKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVPI
TQEKRRYRRVLIIDDVITTGSSISALSLVLKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=483822 IC776_RS16200 WP_191012202.1 3490966..3491601(+) (comF) [Acinetobacter seifertii strain AS39]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGGTAA
GCACTCGCTTTGTAAAGAATGTTGGGAACAACTACCATGGCTTAAGCAGACAGTTCAGCGTAATGATCAATGTGTCCTTG
TGGCCTGCCATTATGCCTATCCAATTAACCGTATAATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTTGCTGAGGTTTTACAGCAAATAAAATTTCCTAAAGTACAAGCCATAGTACCGATGCCTATTTCTAAACAGCGTTTAAC
GGAGCGAGGTTTTAATCAATCCTTATTACTTGCCAAGCTTCTAAGTAAACAATTAAAAATACCCGTTTGGCAGCCTGTCC
AACGCCTCAATGAGCGTTCACAAAAAGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTCCGATA
ACTCAAGAAAAACGGCGCTACCGTCGTGTGCTGATTATTGATGATGTGATCACAACAGGAAGTTCAATTTCCGCTTTAAG
TCTGGTGCTAAAACAGCTAGGGTGCACATCTATTTATGCAAGCTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2P6L9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

92.891

100

0.929
  comF Acinetobacter baumannii D1279779

91.943

100

0.919