Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | IC776_RS08330 | Genome accession | NZ_CP061646 |
| Coordinates | 1793548..1793928 (+) | Length | 126 a.a. |
| NCBI ID | WP_019458993.1 | Uniprot ID | - |
| Organism | Acinetobacter seifertii strain AS39 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1788548..1798928
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IC776_RS08300 (IC776_08300) | kdsB | 1789453..1790214 (+) | 762 | WP_191013116.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| IC776_RS08305 (IC776_08305) | - | 1790226..1791206 (+) | 981 | WP_191013117.1 | DNA polymerase III subunit delta' | - |
| IC776_RS08310 (IC776_08310) | - | 1791219..1791560 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| IC776_RS08315 (IC776_08315) | - | 1791578..1792351 (+) | 774 | WP_077168509.1 | TatD family hydrolase | - |
| IC776_RS08320 (IC776_08320) | - | 1792389..1792997 (+) | 609 | WP_191013259.1 | TetR/AcrR family transcriptional regulator | - |
| IC776_RS08325 (IC776_08325) | - | 1793007..1793558 (+) | 552 | WP_191013118.1 | type II secretion system protein | - |
| IC776_RS08330 (IC776_08330) | xcpV | 1793548..1793928 (+) | 381 | WP_019458993.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| IC776_RS08335 (IC776_08335) | xcpW | 1793928..1794743 (+) | 816 | WP_191013119.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| IC776_RS08340 (IC776_08340) | gspK | 1794743..1795702 (+) | 960 | WP_191013120.1 | type II secretion system minor pseudopilin GspK | - |
| IC776_RS08345 (IC776_08345) | - | 1795932..1796528 (+) | 597 | WP_039251397.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| IC776_RS08350 (IC776_08350) | ung | 1796579..1797292 (+) | 714 | WP_191013121.1 | uracil-DNA glycosylase | - |
| IC776_RS08355 (IC776_08355) | - | 1797289..1798413 (+) | 1125 | WP_019458997.1 | enoyl-CoA hydratase/isomerase family protein | - |
| IC776_RS08360 (IC776_08360) | tadA | 1798421..1798923 (+) | 503 | Protein_1632 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13976.19 Da Isoelectric Point: 9.4463
>NTDB_id=483813 IC776_RS08330 WP_019458993.1 1793548..1793928(+) (xcpV) [Acinetobacter seifertii strain AS39]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=483813 IC776_RS08330 WP_019458993.1 1793548..1793928(+) (xcpV) [Acinetobacter seifertii strain AS39]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCCTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTGGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGCACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTCAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCCTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTGGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGCACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTCAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
96.032 |
100 |
0.96 |