Detailed information NTG0483814

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: IC776_RS08335
• Genome accession: NZ_CP061646
• Coordinates: 1793928..1794743 (+)
• Length: 271 a.a.
• NCBI ID: WP_191013119.1
• Uniprot ID: A0A7H2VBV6
• Organism: Acinetobacter seifertii strain AS39
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1788928..1799743

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC776_RS08300 (IC776_08300)	kdsB	1789453..1790214 (+)	762	WP_191013116.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
IC776_RS08305 (IC776_08305)	-	1790226..1791206 (+)	981	WP_191013117.1	DNA polymerase III subunit delta'	-
IC776_RS08310 (IC776_08310)	-	1791219..1791560 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
IC776_RS08315 (IC776_08315)	-	1791578..1792351 (+)	774	WP_077168509.1	TatD family hydrolase	-
IC776_RS08320 (IC776_08320)	-	1792389..1792997 (+)	609	WP_191013259.1	TetR/AcrR family transcriptional regulator	-
IC776_RS08325 (IC776_08325)	-	1793007..1793558 (+)	552	WP_191013118.1	type II secretion system protein	-
IC776_RS08330 (IC776_08330)	xcpV	1793548..1793928 (+)	381	WP_019458993.1	type II secretion system minor pseudopilin GspI	Machinery gene
IC776_RS08335 (IC776_08335)	xcpW	1793928..1794743 (+)	816	WP_191013119.1	type II secretion system minor pseudopilin GspJ	Machinery gene
IC776_RS08340 (IC776_08340)	gspK	1794743..1795702 (+)	960	WP_191013120.1	type II secretion system minor pseudopilin GspK	-
IC776_RS08345 (IC776_08345)	-	1795932..1796528 (+)	597	WP_039251397.1	6-pyruvoyl trahydropterin synthase family protein	-
IC776_RS08350 (IC776_08350)	ung	1796579..1797292 (+)	714	WP_191013121.1	uracil-DNA glycosylase	-
IC776_RS08355 (IC776_08355)	-	1797289..1798413 (+)	1125	WP_019458997.1	enoyl-CoA hydratase/isomerase family protein	-
IC776_RS08360 (IC776_08360)	tadA	1798421..1798923 (+)	503	Protein_1632	tRNA adenosine(34) deaminase TadA	-
IC776_RS08365 (IC776_08365)	-	1798993..1799433 (+)	441	WP_107973453.1	SRPBCC family protein	-

Sequence

Protein

• Length: 271 a.a.
• Molecular weight: 30667.94 Da
• Isoelectric Point: 9.7403

>NTDB_id=483814 IC776_RS08335 WP_191013119.1 1793928..1794743(+) (xcpW) [Acinetobacter seifertii strain AS39]
MIKNKYFCNRSKVSRLTARSGIVSTDYSEHSSSSYAQTKRCFSDSHTRKTVSHLAARSSSARLARASGFTLVELLVAIAI
FAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLK
QGLSPFERIEYRYDADQKKLYRLKYTNLNTSNNEQPLSSTLLSQVDQYQVMVLTPQEVTKWPEVNIDPTKPNDLKKLPKG
IKIQITVAGVSYEWIYSLNQSNLALSQQGGS

Nucleotide

• Length: 816 bp

>NTDB_id=483814 IC776_RS08335 WP_191013119.1 1793928..1794743(+) (xcpW) [Acinetobacter seifertii strain AS39]
ATGATAAAAAATAAGTACTTTTGCAATCGAAGCAAAGTTTCACGTCTTACGGCACGATCAGGTATTGTGTCGACTGACTA
CTCAGAGCATAGCTCTTCGTCTTACGCTCAGACAAAGCGCTGTTTTAGTGATTCTCACACTCGAAAAACTGTTTCTCATC
TTGCGGCGCGATCGAGCAGTGCTCGATTAGCTCGCGCCTCAGGATTTACGTTGGTTGAGTTATTGGTTGCGATTGCTATT
TTCGCGGTATTATCTTTATTGGGATGGAAAATATTCGATTATTTGCTTAAGGTCCGTGATCGTAACGCCGAACATGAAGT
GCATTTATTTGAATTACAAGATGCTTATCAACAAATTCTTCGTGATACTCTGCAAATTATTCCTTTATCTGCAAATCAAG
GTGGGCAACTTCATCCAGCTTTAGAAATCGATAATCAAATTTTACGTTTTAGCAAAGCAGGCGTAACTGATCCTTTAAAA
CAGGGGTTATCACCATTTGAACGAATTGAATATCGTTATGATGCTGACCAAAAAAAACTATATCGTCTTAAATATACAAA
TTTAAATACTTCGAATAACGAGCAACCTTTATCAAGTACCTTACTAAGTCAAGTTGACCAATATCAGGTTATGGTTTTAA
CTCCGCAAGAAGTAACAAAATGGCCCGAAGTTAATATTGATCCAACAAAACCTAACGATTTAAAAAAATTACCGAAAGGA
ATAAAAATCCAAATTACAGTAGCGGGAGTAAGTTATGAATGGATCTATAGCTTGAATCAAAGCAATTTAGCACTTTCCCA
GCAAGGTGGTTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (65-87)

• Type II secretion system (T2SS), protein J (T2SSJ) (121-250)

3D structure

• AlphaFold DB: A0A7H2VBV6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	92.92	83.395	0.775