Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IC776_RS01195 Genome accession   NZ_CP061646
Coordinates   255410..256831 (-) Length   473 a.a.
NCBI ID   WP_004699259.1    Uniprot ID   N8QZB6
Organism   Acinetobacter seifertii strain AS39     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 250410..261831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC776_RS01180 (IC776_01180) lptG 251463..252533 (+) 1071 WP_039254238.1 LPS export ABC transporter permease LptG -
  IC776_RS01185 (IC776_01185) gpmI 252659..254206 (+) 1548 WP_191012481.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IC776_RS01190 (IC776_01190) - 254222..255406 (+) 1185 WP_151684879.1 S41 family peptidase -
  IC776_RS01195 (IC776_01195) pilR 255410..256831 (-) 1422 WP_004699259.1 sigma-54-dependent transcriptional regulator Regulator
  IC776_RS01200 (IC776_01200) pilS 256856..258424 (-) 1569 WP_223851887.1 sensor histidine kinase Regulator
  IC776_RS01205 (IC776_01205) - 258435..259070 (-) 636 WP_019457005.1 response regulator -
  IC776_RS01210 (IC776_01210) pbpG 259282..260328 (+) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IC776_RS01215 (IC776_01215) thrC 260436..261575 (-) 1140 WP_019457006.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53211.39 Da        Isoelectric Point: 6.5064

>NTDB_id=483797 IC776_RS01195 WP_004699259.1 255410..256831(-) (pilR) [Acinetobacter seifertii strain AS39]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVNKPINQVHLDQLLQKALNRQQTDQDFAETALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPLGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPPKQLSDAAETYLLQQHFPGNVRELRNMIERAITLSDDAQIDVPHLHPAPLRANISSSVPLVSQT
IQNNVTTPQVVKKLPTEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=483797 IC776_RS01195 WP_004699259.1 255410..256831(-) (pilR) [Acinetobacter seifertii strain AS39]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGAATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGACGCATGCT
TAACCGATTTAAATCTACCTGATGGTAGCGGGTTAGACTTAGTCAAACATGTCTCTCAAAACTACCCCAACACCCCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTGAATAAACC
TATTAACCAAGTCCATTTAGATCAGTTATTACAAAAGGCGCTCAATCGGCAACAAACAGATCAAGACTTTGCAGAAACGG
CGCTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATTCAACAATTACGCATTGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCTGTATTTGTTACGGGTGAGTCAGGAACAGGTAAAGAAGTAGTTGCCAACCTAGTTCATCGGTTGAGTAACCG
TAGTGAAGGTCCTTTTATTGCAATTAACTGCGGCGCCATTCCAACTGAACTCATGGAAAGTGAGCTGTTTGGACATAAAA
AAGGCAGTTTCACTGGGGCAACTCAAGATAAACAGGGTCTGATTTTATCGGCTCACGGCGGTAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTCAGTATGCAAGTCAAACTACTGCGTGCGGTACAGGAAAAAAAGATCCGTCCTCTCGGTTCCGA
TCAGGAAATTGATGTTGATTTCCGTGTCATTAGTGCGAGTCATCAAGACTTGGATTTATTGGTTAGACAAGGCAAATTCC
GTCAGGATTTGTTTTTCCGTATCCATGTTATGGACTTGATGTTACCACCGCTACGAGAACGTGGCGAAGATGTCCTTTTA
CTTGCAAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACACCACCCAAACAATTAAGCGACGCAGCCGAGACTTA
TCTCTTACAGCAACACTTTCCTGGCAATGTTCGCGAATTAAGAAACATGATTGAGCGAGCAATCACCCTAAGTGACGATG
CTCAAATTGATGTACCACACTTACATCCAGCGCCATTAAGAGCAAATATCTCTAGCTCAGTACCATTGGTATCTCAGACT
ATACAAAATAACGTTACAACGCCTCAAGTTGTAAAAAAATTGCCAACTGAAGGATTGGAGCGTTATTTAGAGAACATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAACAGAACTTTAGCAGCAAAAAAACTAGGAATGACGTTTC
GTTCTTTACGTTATCGTTTGAAAAAATTTGGCTTAGACACCGAGACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8QZB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

93.446

100

0.934
  pilR Pseudomonas aeruginosa PAK

50.327

97.04

0.488