NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	IC778_RS21645	Genome accession	NZ_CP061634
Coordinates	340022..340882 (-)	Length	286 a.a.
NCBI ID	WP_077169131.1	Uniprot ID	A0A7H2QYC9
Organism	Acinetobacter seifertii strain AS41
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 335022..345882

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC778_RS21680	-	336789..337223 (+)	435	Protein_305	tetratricopeptide repeat protein	-
IC778_RS01605 (IC778_01600)	-	337300..337626 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
IC778_RS01610 (IC778_01605)	rlmB	337729..338478 (+)	750	WP_039251214.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IC778_RS01615 (IC778_01610)	-	338513..339427 (+)	915	WP_077169133.1	DMT family transporter	-
IC778_RS01620 (IC778_01615)	coaE	339424..340020 (-)	597	WP_077169132.1	dephospho-CoA kinase	-
IC778_RS21645 (IC778_01620)	pilD	340022..340882 (-)	861	WP_077169131.1	prepilin peptidase	Machinery gene
IC778_RS01630 (IC778_01625)	pilC	340882..342108 (-)	1227	WP_077169130.1	type II secretion system F family protein	Machinery gene
IC778_RS01635 (IC778_01630)	pilB	342136..343848 (-)	1713	WP_077169129.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IC778_RS01640 (IC778_01635)	tpiA	344138..344932 (+)	795	WP_151731148.1	triose-phosphate isomerase	-
IC778_RS01645 (IC778_01640)	secG	344945..345274 (+)	330	WP_019456770.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32092.52 Da Isoelectric Point: 7.1785

                                >NTDB_id=483751 IC778_RS21645 WP_077169131.1 340022..340882(-) (pilD) [Acinetobacter seifertii strain AS41]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPNCHQP

IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLLGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTAPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAITGIILLKLRNENQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=483751 IC778_RS21645 WP_077169131.1 340022..340882(-) (pilD) [Acinetobacter seifertii strain AS41]

ATGCAAGATATTATTGCTTATTTTATTCAAAATTTAACCGCACTTTATATTGCAGTTGCACTCGTGAGCCTATGTATTGG

TAGCTTTCTAAATGTAGTGATTTATCGCACTCCTAAAATGATGGAACAAGATTGGCAGCAAGAATGTCAAATGTTACTCA

ATCCTGAACAACCAATCATTGATCATGAAAAGCTAACATTAAGTAAACCTGCTTCATCATGTCCAAATTGCCATCAACCG

ATTCGTTGGTATCAAAATATCCCAGTCATAAGCTGGTTGATGTTAAGAGGAAAATGTGGTCATTGCCAACATCCTATCAG

CATTCGTTATCCAGCAATTGAACTACTCACCATGTTATGTTCATTGGTGGTGGTTATGGTGTTTGGCCCGACCATACAAA

TGCTTTTGGGTCTCGTCCTGACTTGGGTTTTAATTGCCCTCACCTTTATAGACTTTGATACACAACTTTTACCTGATCGC

TTTACCCTACCTTTGGCAGCACTTGGCTTGGGCATTAACACCTTTAATATTTATACCGCGCCTAACTCAGCTATTTGGGG

TTATTTAATCGGCTTTTTATGTCTCTGGATTGTGTATTACTTATTTAAAGTGATTACAGGTAAAGAAGGTATGGGCTATG

GCGACTTTAAGTTACTTGCAGCATTGGGCGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGTTATTGTCATCTTTA

TTGGGTGCAATTACTGGCATCATTTTATTAAAGTTAAGAAATGAAAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAGATTTATTTAGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7H2QYC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	97.203	100	0.972
pilD	Acinetobacter baumannii D1279779	96.853	100	0.969
pilD	Vibrio cholerae strain A1552	53.48	95.455	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441

Detailed information NTG0483751