Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IC778_RS17920 Genome accession   NZ_CP061634
Coordinates   3751707..3752351 (-) Length   214 a.a.
NCBI ID   WP_004705190.1    Uniprot ID   N8R2F5
Organism   Acinetobacter seifertii strain AS41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3746707..3757351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC778_RS17900 (IC778_17895) aroK 3747663..3748232 (-) 570 WP_004705195.1 shikimate kinase AroK -
  IC778_RS17905 (IC778_17900) pilQ 3748244..3750370 (-) 2127 WP_151792203.1 type IV pilus secretin PilQ family protein Machinery gene
  IC778_RS17910 (IC778_17905) pilP 3750432..3750959 (-) 528 WP_077168924.1 pilus assembly protein PilP Machinery gene
  IC778_RS17915 (IC778_17910) pilO 3750970..3751710 (-) 741 WP_077168923.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC778_RS17920 (IC778_17915) pilN 3751707..3752351 (-) 645 WP_004705190.1 PilN domain-containing protein Machinery gene
  IC778_RS17925 (IC778_17920) pilM 3752351..3753409 (-) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC778_RS17930 (IC778_17925) ponA 3753571..3756126 (+) 2556 WP_134262504.1 penicillin-binding protein PBP1a -
  IC778_RS17935 (IC778_17930) - 3756144..3756968 (-) 825 WP_143221083.1 putative RNA methyltransferase -
  IC778_RS17940 (IC778_17935) - 3756971..3757303 (-) 333 WP_077168921.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24168.55 Da        Isoelectric Point: 5.3957

>NTDB_id=483748 IC778_RS17920 WP_004705190.1 3751707..3752351(-) (pilN) [Acinetobacter seifertii strain AS41]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLITSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQDLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEDKKDKAASSLLPRVEDHYGSFVVTVDLGEMGMTTADNNADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=483748 IC778_RS17920 WP_004705190.1 3751707..3752351(-) (pilN) [Acinetobacter seifertii strain AS41]
ATGGCAACAATTAATTTACTACCTTGGCGTGAAGAGCTGAGGGAGCAAAGAAAAAAACAATTTATAACGTTATGCTTTGG
GGTGGTTGTGTTAGGAATTACAACCGTATTTGGGGGGTGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ATCAACTTATTACAAGTACTAATCAAAACCTTGATCAGCAATTAAAAGCATTAAATGGTTTACAAGAACAACGTGATGCC
ATCATTGAGCGTATGAAATTGATTCAAGATTTACAGAGTCAGCGTCCAGTCGTGGTAAGACTGGTTGATGAGTTAGTCAG
AGTCACGCCGCCTGCAATGTATTTAACGAAATTTAGCCGAACTGGGGATAAATTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTAGCTGAACTACTCCGTAATCTAGAAGCATCTCCTTGGTATCGAAATGCTTTTATGAACTCTTTCTTGGCT
ACTGAAGATAAAAAAGATAAGGCAGCAAGTTCTCTTCTTCCTAGGGTAGAAGATCATTACGGTAGTTTTGTTGTGACTGT
CGATTTAGGGGAAATGGGCATGACCACAGCTGATAATAATGCTGATAAACCAGCCGTAGCTAAAGATACGGGGGCAGCAA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8R2F5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

92.056

100

0.921
  comN Acinetobacter baylyi ADP1

70.616

98.598

0.696