Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IC781_RS16450 Genome accession   NZ_CP061626
Coordinates   3473477..3474112 (+) Length   211 a.a.
NCBI ID   WP_191010517.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3468477..3479112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS16435 (IC781_16435) - 3469537..3470523 (-) 987 WP_025465167.1 putative solute-binding protein -
  IC781_RS16440 (IC781_16440) - 3470591..3471418 (-) 828 WP_019457791.1 NAD-dependent epimerase/dehydratase family protein -
  IC781_RS16445 (IC781_16445) recG 3471439..3473484 (+) 2046 WP_191010516.1 ATP-dependent DNA helicase RecG -
  IC781_RS16450 (IC781_16450) comF 3473477..3474112 (+) 636 WP_191010517.1 ComF family protein Machinery gene
  IC781_RS16455 (IC781_16455) - 3474118..3474516 (-) 399 WP_004705348.1 NUDIX hydrolase -
  IC781_RS16460 (IC781_16460) - 3474531..3475112 (-) 582 WP_004705346.1 TIGR00730 family Rossman fold protein -
  IC781_RS16465 (IC781_16465) - 3475270..3476283 (+) 1014 WP_004705344.1 magnesium and cobalt transport protein CorA -
  IC781_RS16470 (IC781_16470) - 3476357..3476644 (-) 288 WP_019457795.1 lipid asymmetry maintenance protein MlaB -
  IC781_RS16475 (IC781_16475) - 3476656..3477297 (-) 642 WP_039253560.1 phospholipid-binding protein MlaC -
  IC781_RS16480 (IC781_16480) - 3477324..3478007 (-) 684 WP_191010518.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IC781_RS16485 (IC781_16485) mlaE 3478007..3478783 (-) 777 WP_004705340.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24469.82 Da        Isoelectric Point: 10.0616

>NTDB_id=483655 IC781_RS16450 WP_191010517.1 3473477..3474112(+) (comF) [Acinetobacter seifertii strain AS48]
MFKLFNPQYLFQLLSPCLLCEIGTRGKHSLCKECWEQLPWLKQAVQRNDLSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEILQQLKFPKVQAIVPMPISKERLTERGFNQSLLLAKLLSKQLRIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAI
PQEKRRYRRVLIIDDVITTGSSISALSLVLKKLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=483655 IC781_RS16450 WP_191010517.1 3473477..3474112(+) (comF) [Acinetobacter seifertii strain AS48]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGGTAA
GCACTCGCTTTGTAAAGAATGTTGGGAACAACTACCATGGCTTAAGCAGGCAGTTCAGCGTAATGATCTATCTGTTCTTG
TGGCCTGTCATTATGCCTATCCAATTAACCGCATAATTCAGCAGTTTAAATATGAACAGAAATTACATTACCAAACCCTA
CTTGCTGAAATTTTACAGCAATTAAAATTTCCTAAGGTACAAGCCATAGTACCGATGCCCATTTCTAAAGAGCGTCTAAC
GGAGCGAGGTTTTAATCAATCATTATTACTTGCCAAGCTTCTAAGTAAACAATTAAGAATACCCGTTTGGCAGCCTGTCC
AACGCCTCAATGAGCGTTCACAAAAAGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGATA
CCTCAAGAAAAACGGCGCTACCGTCGTGTGCTGATTATTGATGATGTGATCACAACAGGAAGTTCAATTTCCGCTTTAAG
TCTAGTGCTAAAAAAGCTAGGGTGCACATCTATTTATGCGAGCTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

90.995

100

0.91
  comF Acinetobacter baumannii D1279779

90.047

100

0.9