Detailed information NTG0483653

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: J7U05_RS09275
• Genome accession: NZ_CP072443
• Coordinates: 1780989..1782089 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain S24724
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1775989..1787089

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U05_RS09250 (J7U05_09260)	pgsA	1776531..1777073 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
J7U05_RS09255 (J7U05_09265)	-	1777086..1777943 (-)	858	WP_116920381.1	helix-turn-helix transcriptional regulator	-
J7U05_RS09260 (J7U05_09270)	yfmH	1778002..1779279 (-)	1278	WP_011226704.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
J7U05_RS09265 (J7U05_09275)	yfmF	1779281..1780531 (-)	1251	WP_011681762.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
J7U05_RS09270 (J7U05_09280)	yaaA	1780609..1780986 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
J7U05_RS09275 (J7U05_09285)	recF	1780989..1782089 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
J7U05_RS09280 (J7U05_09290)	guaB	1782258..1783739 (-)	1482	WP_014608806.1	IMP dehydrogenase	-
J7U05_RS09285 (J7U05_09295)	trpS	1783916..1784938 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
J7U05_RS09290 (J7U05_09300)	-	1785366..1786238 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=483653 J7U05_RS09275 WP_002947786.1 1780989..1782089(+) (recF) [Streptococcus thermophilus strain S24724]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=483653 J7U05_RS09275 WP_002947786.1 1780989..1782089(+) (recF) [Streptococcus thermophilus strain S24724]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432