Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IC781_RS01290 Genome accession   NZ_CP061626
Coordinates   281192..282760 (-) Length   522 a.a.
NCBI ID   WP_004699258.1    Uniprot ID   N8SDW0
Organism   Acinetobacter seifertii strain AS48     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 276192..287760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS01275 (IC781_01275) gpmI 276995..278542 (+) 1548 WP_004699264.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IC781_RS01280 (IC781_01280) - 278558..279742 (+) 1185 WP_004699262.1 S41 family peptidase -
  IC781_RS01285 (IC781_01285) pilR 279746..281167 (-) 1422 WP_004699259.1 sigma-54-dependent transcriptional regulator Regulator
  IC781_RS01290 (IC781_01290) pilS 281192..282760 (-) 1569 WP_004699258.1 sensor histidine kinase Regulator
  IC781_RS01295 (IC781_01295) - 282771..283406 (-) 636 WP_004699257.1 response regulator -
  IC781_RS01300 (IC781_01300) pbpG 283618..284664 (+) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IC781_RS01305 (IC781_01305) thrC 284773..285912 (-) 1140 WP_002048893.1 threonine synthase -
  IC781_RS01310 (IC781_01310) - 285967..287268 (-) 1302 WP_004699253.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59066.33 Da        Isoelectric Point: 6.4469

>NTDB_id=483631 IC781_RS01290 WP_004699258.1 281192..282760(-) (pilS) [Acinetobacter seifertii strain AS48]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLTIILVSTNAQADNSLQQPSLYFYTLLGYSIVSLVQLLGFKFIATQATRQ
LALFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLIITLLAIIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSVELYQLQNINRYILEQIEEGYLVLDEDYNIVLSNPAACSLLGIPPQFANE
KYPLAKWHTDLYEILKFGELQEGDRFIFESRLSTYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQAKRIDSIVQDTLGLARSERTHPIQIDLSHFITSLFEEDLSDVK
HSIRLEISDNYLKFLFDEKQLRQVMINLVRNALRHNAPDSPNVTINIHSQANKIYIDVIDYGEGVLKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=483631 IC781_RS01290 WP_004699258.1 281192..282760(-) (pilS) [Acinetobacter seifertii strain AS48]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGACTATTATTTTGGTTTCAACCAATGCTCAAGCCGACAATAGTTTGCAGCAACCATCTTTATATTTTT
ATACGCTACTAGGCTACTCAATTGTCAGTCTTGTTCAATTGTTAGGCTTTAAATTTATCGCAACTCAGGCAACACGCCAG
CTTGCTTTATTTTTTATTGTCGATGTTATTTGTTTGAGTTTACTGACTTTTTCTGTTGGTGAACCAAATTTACAGCTTAG
TCTACTTTATGTAATTGCAATCTTTACCTCGGCAATTTTGCTCAGCGCAAGAATGTCTTTAATCATTACCTTGCTTGCGA
TCATTGCAGTTATTTACCAACGCTTCGTGGGGAGTTTGTTCGACTACAACAATCTAAACACGATTGGGAATAGTGCCTTA
CTCGCTTTCTTATTTTTTGTCGTTCATGGGATTGGTCAAATTGCGGTTCAGCGCTTTAAATTACTTGAAGCTTTGACCTT
TCACCAGTCAGTTGAACTTTATCAACTTCAAAATATTAACCGTTATATTTTAGAACAAATTGAAGAAGGCTATTTAGTCT
TAGATGAAGACTACAACATTGTGCTCAGCAATCCAGCTGCTTGCTCACTGCTCGGTATTCCACCCCAATTTGCCAACGAA
AAATATCCTTTAGCCAAGTGGCATACCGACTTATATGAGATTCTTAAGTTTGGTGAATTACAAGAAGGTGACCGATTTAT
TTTTGAGTCCCGCCTATCGACTTATTCCATTAATATTAAAGTGCAGCACCTTTTGGTCCCACAACAAGCACTGACACTGC
TCATTTTACAAGATGCCCAGCAAATTAATCAGCAAGCACAACAGCTCAAACTTGCTGCTTTAGGGCAACTTTCAGCAAGT
ATTGCACATGAAATCCGCAATCCTTTGGCTGCAATTGTACAAGCAAATGAGCTACTTAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGACATATGATTGGTAAACAAGCCAAACGTATTGACAGTATTGTTCAAGATACTTTGGGGCTTGCACGTA
GTGAAAGAACTCATCCTATTCAGATTGACTTAAGTCATTTTATAACAAGTTTATTCGAAGAAGATTTATCAGACGTTAAG
CACTCTATCCGACTCGAAATATCTGATAATTATCTAAAATTTTTATTTGACGAAAAACAATTACGACAAGTTATGATCAA
TTTGGTGCGAAATGCTTTACGGCATAATGCACCTGATTCACCTAATGTCACGATCAATATTCATTCACAAGCAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTATTAAAACGTGATATATCTCAACTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTCTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-282)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8SDW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

92.146

100

0.921