Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   J7T63_RS09030 Genome accession   NZ_CP072442
Coordinates   1723725..1724018 (-) Length   97 a.a.
NCBI ID   WP_082309154.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24726     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1718725..1729018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T63_RS08995 (J7T63_08920) - 1719128..1719571 (-) 444 WP_041829335.1 hypothetical protein -
  J7T63_RS09000 - 1719645..1719983 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  J7T63_RS09005 (J7T63_08930) - 1720313..1720510 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  J7T63_RS09010 (J7T63_08935) - 1720759..1721952 (-) 1194 WP_372429425.1 acetate kinase -
  J7T63_RS09015 (J7T63_08940) comGH 1722008..1722964 (-) 957 WP_084831205.1 class I SAM-dependent methyltransferase Machinery gene
  J7T63_RS09020 (J7T63_08945) comGG 1723009..1723326 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG Machinery gene
  J7T63_RS09025 (J7T63_08950) comGF 1723304..1723741 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7T63_RS09030 (J7T63_08955) comGE 1723725..1724018 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE Machinery gene
  J7T63_RS09035 (J7T63_08960) comGD 1723990..1724418 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7T63_RS09040 (J7T63_08965) comGC 1724378..1724704 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  J7T63_RS09045 (J7T63_08970) comGB 1724701..1725800 (-) 1100 Protein_1725 competence type IV pilus assembly protein ComGB -
  J7T63_RS09050 (J7T63_08975) comGA/cglA/cilD 1725682..1726623 (-) 942 WP_071417491.1 competence type IV pilus ATPase ComGA Machinery gene
  J7T63_RS09055 (J7T63_08980) - 1726704..1727066 (-) 363 WP_014622006.1 DUF1033 family protein -
  J7T63_RS09060 (J7T63_08985) - 1727336..1728585 (+) 1250 Protein_1728 ISL3 family transposase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10860.74 Da        Isoelectric Point: 10.4561

>NTDB_id=483542 J7T63_RS09030 WP_082309154.1 1723725..1724018(-) (comGE) [Streptococcus thermophilus strain S24726]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMSDNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=483542 J7T63_RS09030 WP_082309154.1 1723725..1724018(-) (comGE) [Streptococcus thermophilus strain S24726]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGTCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.268

100

0.423
  comGE Streptococcus mutans UA159

42.268

100

0.423